9 months ago • updated 1 day ago
shepherl
3.8k
3
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18
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2.8k
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0
votes
6
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544
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7 weeks ago • updated 6 days ago
shepherl
3.8k
0
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4
replies
686
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0
votes
3
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501
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0
votes
2
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838
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12 months ago • updated 10 months ago
shepherl
3.8k
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2
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507
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11 months ago • updated 10 months ago
Franck RICHARD
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0
3
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6
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1.1k
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updated 13 months ago by
darrelvanhoy
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0
•
written 13 months ago by
shepherl
3.8k
1
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2
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857
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14 months ago
Amanda D. Clark
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0
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0
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746
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17 months ago
Robert Castelo
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3.2k
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0
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549
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0
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2
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730
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18 months ago • updated 17 months ago
shepherl
3.8k
0
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0
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696
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18 months ago
shepherl
3.8k
4
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0
replies
640
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0
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3
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800
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updated 22 months ago by
Gordon Smyth
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written 22 months ago by
Jonathan
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0
0
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4
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1.1k
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2.1 years ago • updated 18 months ago
shepherl
3.8k
0
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0
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602
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2.1 years ago
shepherl
3.8k
1
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0
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812
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4
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2
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1.2k
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2.6 years ago
Guillaume Devailly
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60
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2
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1.5k
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updated 2.6 years ago by
Mike Smith
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6.5k
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written 2.6 years ago by
Franck
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0
1
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0
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832
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0
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0
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789
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2.7 years ago
shepherl
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2
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9
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1.6k
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updated 2.8 years ago by
kayla.interdonato
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160
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written 2.9 years ago by
athief
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20
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0
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706
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0
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0
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789
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3.0 years ago
shepherl
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0
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862
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0
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0
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727
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4.1 years ago
shepherl
3.8k
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0
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876
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0
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0
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801
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0
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1
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952
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1.2k
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1.1k
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1
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992
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1.3k
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1
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2.0k
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updated 8.4 years ago by
Martin Morgan
25k
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written 8.4 years ago by
MarcinKosiński
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0
3
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1
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1.2k
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updated 8.9 years ago by
Martin Morgan
25k
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written 8.9 years ago by
andrew.j.skelton73
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370
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Replies
Comment: Which input file is used for DGEList in EgdeR?
by
i.atanasoai
•
0
Understood, Thank you very much for the reply, very kind.
Comment: Which input file is used for DGEList in EgdeR?
by
Michael Love
41k
"gene_counts_length_scaled.tsv file generated by the nf-core be exactly that?"
No that is the counts scaled by the length. Counts + offset…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
These genes are fine. They are just the ones where, by chance, the sample variance is below the sample mean. It happens. DESeq2 brings thes…
Comment: DEG with low counts
by
Michael Love
41k
These counts are too low, only a few samples above a count of 10. So for typical RNA-seq data that is underpowered to call differences.
It…
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
If the counts are too low it in one group then you can't make the comparison either way (whether they are filtered out or just under-powere…
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