3 months ago
shepherl
3.4k
0
votes
2
replies
187
views
0
votes
0
replies
233
views
9 months ago
pgauthi1
•
0
0
votes
4
replies
502
views
10 months ago • updated 3 months ago
shepherl
3.4k
0
votes
5
replies
669
views
15 months ago • updated 9 months ago
shepherl
3.4k
2
votes
2
replies
1.0k
views
2.2 years ago • updated 21 months ago
shepherl
3.4k
0
votes
3
replies
553
views
0
votes
0
replies
380
views
2.9 years ago
shepherl
3.4k
0
votes
1
reply
448
views
3.1 years ago
shepherl
3.4k
0
votes
0
replies
459
views
3.2 years ago
shepherl
3.4k
0
votes
2
replies
835
views
3.3 years ago • updated 3.2 years ago
shepherl
3.4k
0
votes
0
replies
485
views
3.4 years ago • updated 3.3 years ago
shepherl
3.4k
0
votes
1
reply
611
views
3.5 years ago • updated 3.4 years ago
shepherl
3.4k
1
vote
5
replies
789
views
3.9 years ago • updated 3.6 years ago
shepherl
3.4k
0
votes
3
replies
604
views
3.7 years ago
shepherl
3.4k
0
votes
1
reply
479
views
3.7 years ago
shepherl
3.4k
Recent ...
Replies
Answer: struggling to create a heatmap
by
ATpoint
★
2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★
2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★
2.1k
You can take over some of the lines from `results()` to find them easily:
```r
suppressPackageStartupMessages(library(DESeq2))
set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Awards
• All
Popular Question to
Ryan
•
0
Popular Question to
Guido Hooiveld
★
3.5k
Scholar to
James W. MacDonald
62k
Commentator to
Michael Love
39k
Popular Question to
twtoal
▴
10
Locations
• All
WEHI, Melbourne, Australia, 39 minutes ago
Germany, 46 minutes ago
Germany, 1 hour ago
Turkey, 1 hour ago
Italy, 2 hours ago
WEHI, Melbourne, Australia, 39 minutes ago
Germany, 46 minutes ago
Germany, 1 hour ago
Turkey, 1 hour ago
Italy, 2 hours ago
Traffic: 211 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6