SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
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saira • 0
@021c4eb8
Last seen 9 months ago
United Kingdom

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Code should be placed in three backticks as shown below


reads1 <- list.files( path = "path", pattern = "*_1.fastq$" )
reads2 <- list.files( path = "path", pattern = "*_2.fastq$" )

align(index = "ht", readfile1 = reads1, readfile2 = reads2, input_format = "FASTQ", output_format = "BAM", nthreads = 16)   **#this line  brings up error****

Error in align(index = "ht", readfile1 = reads1, readfile2 = reads2, input_format = "FASTQ", : The number of input file names is different from the number of output file names.

align Alignment subread • 259 views
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