Bioconductor Align

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341

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Clariom Align MicroarrayData Alignment Microarray

7 months ago jsharif • 0

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544

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align Alignment subread

17 months ago saira • 0

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1.0k

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Rsubread align Alignment

updated 2.2 years ago by Gordon Smyth 48k • written 2.2 years ago by mike_flower • 0

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1.9k

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SubRead Align Subjunc

updated 3.2 years ago by James W. MacDonald 63k • written 3.2 years ago by abano • 0

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1.0k

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Rsubread align

3.5 years ago Joseph Fass ▴ 70

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1.4k

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Rsubread malloc align

updated 3.9 years ago by Gordon Smyth 48k • written 4.1 years ago by Konstantinos Yeles ▴ 80

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align rsubread roche454 rnaseq

updated 4.4 years ago by Wei Shi ★ 3.5k • written 4.4 years ago by Raito92 ▴ 60

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2.0k

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rsubread alignment align

4.8 years ago A ▴ 40

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1.5k

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rsubread align segfault

updated 7.3 years ago by Wei Shi ★ 3.5k • written 7.3 years ago by gerard_llimos ▴ 10

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1.5k

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rsubread mapping featurecounts align

7.8 years ago Jo ▴ 30

10 results • Page 1 of 1

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Comment: Phenotype effect - building a contrast matrix - grouping vs interaction by Gordon Smyth 48k

I am telling you that `LS_B.vs.NL_B` is completely uninteresting. You need instead to examine `LS_Y.vs.NL_Y` and `LS_N.vs.NL_N` separately.

Answer: Batch correction and repeated measures by Gordon Smyth 48k

You should just do a standard limma analysis as recommended in the previous posts. ``` design <- model.matrix(~0 + Sample.Type + batch) i <…

Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0

When I apply the model.matrix approach for getting the contrasts, the code > mod_mat <- model.matrix(design(dds), colData(dds)) > CondA.t…

Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0

Yes, I agree, the correct contrast setting is quite challenging. The vignette says >contrast: a list of 2 character vectors: the names of…

Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Michael Love 40k

Advantage and disadvantage depends on the aim, what you plan to do with them (testing, plots, etc.). lengthScaledTPM puts back *in* the ge…

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Answer: Batch correction and repeated measures

Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?

Awards • All

Scholar to James W. MacDonald 63k