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align
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768
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
19 months ago
jsharif
• 0
0
votes
0
replies
824
views
SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
align
Alignment
subread
2.4 years ago
saira
• 0
2
votes
2
replies
1.5k
views
Rsubread doesn't output a .bai file
Rsubread
align
Alignment
updated 3.2 years ago by
Gordon Smyth
51k • written 3.2 years ago by
mike_flower
• 0
1
vote
5
replies
2.8k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 4.2 years ago by
James W. MacDonald
67k • written 4.2 years ago by
abano
• 0
0
votes
4
replies
1.4k
views
segfault "memory not mapped" using align from Rsubread
Rsubread
align
4.5 years ago
Joseph Fass
▴ 70
5
votes
6
replies
1.9k
views
Rsubread malloc(): memory corruption
Rsubread
malloc
align
updated 4.9 years ago by
Gordon Smyth
51k • written 5.0 years ago by
Konstantinos Yeles
▴ 80
5
votes
6
replies
1.6k
views
Improving the performance of the align function from Rsubread for old Roche454 reads
align
rsubread
roche454
rnaseq
updated 5.4 years ago by
Wei Shi
★ 3.6k • written 5.4 years ago by
Raito92
▴ 60
0
votes
9
replies
2.9k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread
alignment
align
5.8 years ago
A
▴ 40
1
vote
5
replies
2.0k
views
Error using Rsubread align: caugh segfault invalid permissions
rsubread
align
segfault
updated 8.3 years ago by
Wei Shi
★ 3.6k • written 8.3 years ago by
gerard_llimos
▴ 10
0
votes
1
reply
1.8k
views
RSubread 0% mapping
rsubread
mapping
featurecounts
align
8.7 years ago
Jo
▴ 30
10 results • Page
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Comment: How to read OSCA book?
by
zr
• 0
Got it, that had really confused me a bit, thank you for your help!
Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl
by
James W. MacDonald
67k
Please don't add questions onto a four-year old post. Instead, start a new one. If you want to reference the old post, that's fine.
Answer: How to use removeBatchEffect for removing effect of multiple confounding variabl
by
bioinformata
• 0
Is it feasible to remove batch effect with limma after variance stabilizing transformation of the gene expression , or is eough to use vst…
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
by
James W. MacDonald
67k
Hi Guido, It's that last filtering step. You are saying the NCBI Gene ID has to be unique AND the ontology has to be BP, which isn't what …
Comment: AffylmGUI does not start wit R 4.4.1
by
richardallenfriedmanbrooklyn
▴ 20
Gordon, I found out what went wrong. The problem was that the xquartz distribution for mac from cran did not include tcltk! I found that b…
Votes
Answer: How to read OSCA book?
Answer: How to read OSCA book?
DESeq2 design and contrasts with 2 drug-treated and one control group
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
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