How to get around the warning message: mzR has been built against a different Rcpp version
1
0
Entering edit mode
@08211a01
Last seen 13 months ago
China

Hi everyone, I am trying to use "xcms" package (of Bioconductor) in R.4.2.3 for analyzing some metabolism data, but I am getting this error:

library(xcms)
library(mzR)

Warning message: In fun(libname, pkgname) : mzR has been built against a different Rcpp version (1.0.9) than is installed on your system (1.0.10). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/. For details see also https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.

sessionInfo()

R version 4.2.3 (2023-03-15 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22000)

Matrix products: default

locale: [1] LC_COLLATE=Chinese (Simplified)_China.utf8 LC_CTYPE=Chinese (Simplified)_China.utf8
[3] LC_MONETARY=Chinese (Simplified)_China.utf8 LC_NUMERIC=C
[5] LC_TIME=Chinese (Simplified)_China.utf8

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] xcms_3.20.0 MSnbase_2.24.2 ProtGenerics_1.30.0 S4Vectors_0.36.2 mzR_2.32.0
[6] Rcpp_1.0.10 Biobase_2.58.0 BiocGenerics_0.44.0 BiocParallel_1.32.6

loaded via a namespace (and not attached): [1] lattice_0.20-45 digest_0.6.31 foreach_1.5.2
[4] utf8_1.2.3 R6_2.5.1 GenomeInfoDb_1.34.9
[7] plyr_1.8.8 mzID_1.36.0 ggplot2_3.4.1
[10] pillar_1.9.0 zlibbioc_1.44.0 rlang_1.1.0
[13] rstudioapi_0.14 Matrix_1.5-3 preprocessCore_1.60.2
[16] RCurl_1.98-1.12 munsell_0.5.0 DelayedArray_0.24.0
[19] compiler_4.2.3 MsFeatures_1.6.0 pkgconfig_2.0.3
[22] pcaMethods_1.90.0 tidyselect_1.2.0 SummarizedExperiment_1.28.0 [25] tibble_3.2.1 GenomeInfoDbData_1.2.9 RANN_2.6.1
[28] IRanges_2.32.0 codetools_0.2-19 matrixStats_0.63.0
[31] XML_3.99-0.14 fansi_1.0.4 dplyr_1.1.1
[34] MASS_7.3-58.3 bitops_1.0-7 MassSpecWavelet_1.64.1
[37] grid_4.2.3 gtable_0.3.3 lifecycle_1.0.3
[40] affy_1.76.0 DBI_1.1.3 magrittr_2.0.3
[43] MsCoreUtils_1.10.0 scales_1.2.1 ncdf4_1.21
[46] cli_3.6.1 impute_1.72.3 XVector_0.38.0
[49] affyio_1.68.0 doParallel_1.0.17 limma_3.54.2
[52] robustbase_0.95-1 generics_0.1.3 vctrs_0.6.1
[55] RColorBrewer_1.1-3 iterators_1.0.14 tools_4.2.3
[58] glue_1.6.2 DEoptimR_1.0-11 MatrixGenerics_1.10.0
[61] parallel_4.2.3 clue_0.3-64 colorspace_2.1-0
[64] cluster_2.1.4 BiocManager_1.30.20 vsn_3.66.0
[67] GenomicRanges_1.50.2 MALDIquant_1.22.1

Many thanks in advance, Luang

xcms mzR • 495 views
ADD COMMENT
0
Entering edit mode
ATpoint ★ 4.2k
@atpoint-13662
Last seen 10 hours ago
Germany

mzR has been built against a different Rcpp version

ADD COMMENT

Login before adding your answer.

Traffic: 722 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6