Where can I use the VSN source code in C++?
1
0
Entering edit mode
core_wzw • 0
@core_wzw-12357
Last seen 7.2 years ago

I want to using the VSN to process some data in C++ and where can I find the source code of VSN?

Please help me!

http://bioconductor.org/packages/release/bioc/html/vsn.html, Here is the homepage of VSN in R.

vsn r language C++ source code • 1.5k views
ADD COMMENT
3
Entering edit mode
@lluis-revilla-sancho
Last seen 3 days ago
European Union

The code can be downloaded from the homepage of VSN, or from the github mirror.

ADD COMMENT
0
Entering edit mode

Also in old-school SVN, the authoritative source. But really you should be using the functionality exposed by the package, rather than accessing it through some 'back-door' mechanism or forking  the code base.

The appropriate forum for discussion of package development is the Bioc-devel mailing list.

ADD REPLY
0
Entering edit mode

Thank you for the help. But I can not find the C++ source code at the VSN`s github mirror and homepage.

In the github mirror, there are some VSN.c/h which lost some R.h files. What`s more, they are not VSN source code but Rcpp code which using C++ to run the R code.

I still don`t know how to write the pure VSN function.

ADD REPLY
1
Entering edit mode

The code of the vsn package is partially in R and partially in C++ called into R using Rcpp. If the package wouldn't work as it is it wouldn't be in Bioconductor (for much longer), see the definition of the method in R. I don't understand which R.h files do you expect, or why do you expect having vsn completely implemented in C++.

ADD REPLY

Login before adding your answer.

Traffic: 922 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6