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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
4.4 years ago
Andrea Carenzo
• 0
0
votes
0
replies
576
views
Error while extracting pseudo amino acid composition using protr
r
source code
error
4.6 years ago
shreyasarkar0
• 0
2
votes
4
replies
729
views
package "isa2", function isa.iterate()
source code
isa.iterate()
updated 5.6 years ago by
Haiying.Kong
▴ 110 • written 5.6 years ago by
zhang.jianhai
▴ 10
4
votes
4
replies
1.1k
views
Where can I use the VSN source code in C++?
vsn
r language
C++
source code
updated 6.0 years ago by
Lluís Revilla Sancho
▴ 700 • written 6.0 years ago by
core_wzw
• 0
0
votes
1
reply
822
views
get LCMS masses with more significant figures
source code
xcms
m/z
groupval
xcmsSet
updated 6.2 years ago by
Johannes Rainer
★ 2.0k • written 6.2 years ago by
juniormbarga
• 0
0
votes
3
replies
1.2k
views
Locating older version of Bioconductor packages
reproducibility
archive
source code
updated 7.3 years ago by
Dan Tenenbaum
★ 8.2k • written 7.3 years ago by
brucbruc
• 0
0
votes
2
replies
1.1k
views
Bioconductor source code - Errno::ECONNREFUSED in Codes#show
medips
bioconductor
error
source code
8.2 years ago
malbert1
• 0
7 results • Page
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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