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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
3.4 years ago Andrea Carenzo • 0
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Error while extracting pseudo amino acid composition using protr
r source code error
3.6 years ago shreyasarkar0 • 0
2
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4
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559
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package "isa2", function isa.iterate()
source code isa.iterate()
updated 4.6 years ago by ▴ 110 • written 4.6 years ago by • 0
4
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4
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Where can I use the VSN source code in C++?
vsn r language C++ source code
updated 4.9 years ago by ▴ 660 • written 4.9 years ago by • 0
0
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1
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678
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get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 5.2 years ago by ★ 1.9k • written 5.2 years ago by • 0
0
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3
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Locating older version of Bioconductor packages
reproducibility archive source code
updated 6.3 years ago by ★ 8.2k • written 6.3 years ago by • 0
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Bioconductor source code - Errno::ECONNREFUSED in Codes#show
medips bioconductor error source code
7.1 years ago malbert1 • 0
7 results • Page 1 of 1
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Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by tjhwangxiong • 0
``` https://drive.google.com/drive/folders/1787thVatZpt_KFrfXY-aXV1m0FRm8Mhm?usp=sharing ``` Thanks for your reply. I have uploaded the fil…
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
No I can’t help with exercises. Just to be clear I’m not affiliated with Harvard and have no supported effort in relation to the edx classe…
Answer: Problems to find the pvalues via rowttests by Gordon Smyth 44k
Ordinary t-tests aren't recommended for genomic analyses because they have poor power and higher false discovery rates. Using the limma p…
Answer: How to insert a qvalues column in a dataframe with pvalues in R by Gordon Smyth 44k
Here and in a previous post, it seems you're not using recommended Bioconductor workflows for Affymetrix microarrays. If you used a standar…
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
Thank you. I hope I can still let you know if I have issues with your exercises. They are very challenging but useful! :)
Votes
Answer: Problems to find the pvalues via rowttests
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
Annotating GRanges with TxDb gene models using plyranges
plyranges select() when a metadata column is shared with core variable
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