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geparada88
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10
@geparada88-9603
Last seen 7.7 years ago
Hello,
I updated R, and now I can not install deSolve. I am getting a compilation error:
install.packages("deSolve") trying URL 'https://cran.rstudio.com/src/contrib/deSolve_1.14.tar.gz' Content type 'application/x-gzip' length 2341489 bytes (2.2 MB) ================================================== downloaded 2.2 MB * installing *source* package ‘deSolve’ ... ** package ‘deSolve’ successfully unpacked and MD5 sums checked ** libs clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c DLLutil.c -o DLLutil.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c R_init_deSolve.c -o R_init_deSolve.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c brent.c -o brent.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_daspk.c -o call_daspk.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_euler.c -o call_euler.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_iteration.c -o call_iteration.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_lsoda.c -o call_lsoda.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_radau.c -o call_radau.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_rk4.c -o call_rk4.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_rkAuto.c -o call_rkAuto.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_rkFixed.c -o call_rkFixed.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_rkImplicit.c -o call_rkImplicit.o clang -I/Users/gp7/miniconda2/lib/R/include -DNDEBUG -I/Users/gp7/miniconda2/include -fPIC -I/Users/gp7/miniconda2/include -c call_zvode.c -o call_zvode.o gfortran -fPIC -I/Users/gp7/miniconda2/include -L/Users/gp7/miniconda2/lib -c daux.f -o daux.o make: gfortran: No such file or directory make: *** [daux.o] Error 1 ERROR: compilation failed for package ‘deSolve’ * removing ‘/Users/gp7/miniconda2/lib/R/library/deSolve’ Warning in install.packages : installation of package ‘deSolve’ had non-zero exit status The downloaded source packages are in ‘/private/var/folders/0h/z3ycz6gx4rj5_frl6r5wnvbw000g0g/T/RtmpGaoXm9/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done
This is my R setup:
R.Version () $platform [1] "x86_64-apple-darwin11.4.2" $arch [1] "x86_64" $os [1] "darwin11.4.2" $system [1] "x86_64, darwin11.4.2" $status [1] "" $major [1] "3" $minor [1] "3.2" $year [1] "2016" $month [1] "10" $day [1] "31" $`svn rev` [1] "71607" $language [1] "R" $version.string [1] "R version 3.3.2 (2016-10-31)" $nickname [1] "Sincere Pumpkin Patch"
Any help will be really appreciated!
Thank you Martin,
I realised this after posting the question. I'll be more careful next time.