Question: Illumina methylationEPIC demo data in IDAT format?
0
gravatar for Ellen O
2.5 years ago by
Ellen O0
Stellenbosch University, South Africa
Ellen O0 wrote:

Does anyone know of an available data set for the Illumina EPIC/ 850k array that has files in IDAT format that one can download? I am testing a pipeline before I get my own data back and would like to start with the raw files. Illumina's demo data only has three samples and I would like to test out more.

Thank you in advance!

ADD COMMENTlink modified 2.5 years ago by Guido Hooiveld2.5k • written 2.5 years ago by Ellen O0
Answer: Illumina methylationEPIC demo data in IDAT format?
0
gravatar for Guido Hooiveld
2.5 years ago by
Guido Hooiveld2.5k
Wageningen University, Wageningen, the Netherlands
Guido Hooiveld2.5k wrote:

Why not check GEO whether such data set exist?

All samples submitted that were analyzed on this array: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL21145

One of the experiments that has the idat files: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92579

 

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by Guido Hooiveld2.5k

Thanks Guido!

ADD REPLYlink written 2.5 years ago by Ellen O0
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