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EPIC
•
reset
0
votes
2
replies
351
views
Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi
minfi
microarray
epic
2.1 years ago • updated 18 months ago
Nala
• 0
2
votes
1
reply
317
views
lumi: Importing Methylation EPIC IDAT files
lumi
EPIC
Methylation
2.1 years ago
Zach Roe
▴ 10
1
vote
1
reply
317
views
SVA paired samples
SVA
EPIC
methylation
limma
updated 2.2 years ago by
James W. MacDonald
59k • written 2.2 years ago by
whyw6948
• 0
1
vote
3
replies
496
views
Skewed beta-distribution from Methylation EPIC array data
ChAMP
EPIC
Illumina
Methylation
2.3 years ago
erwin.tomasich
▴ 10
1
vote
1
reply
306
views
Issue with ChAMP DMP.GUI
ChAMP
champ
methylation
EPIC
updated 2.3 years ago by
Yuan Tian
▴ 90 • written 2.3 years ago by
cherlyn.t
• 0
2
votes
16
replies
1.0k
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation
epic
champ
champ.load()
Methylation array
updated 2.4 years ago by
Yuan Tian
▴ 250 • written 2.4 years ago by
Ankit
▴ 10
3
votes
5
replies
480
views
DMRcate: Cpgids in DMR
methylation
Epic
annotation
DMRcate
updated 2.6 years ago by
James W. MacDonald
59k • written 2.6 years ago by
yoursbassanio
▴ 10
0
votes
3
replies
599
views
WGCNA soft threshold with methylation data but no scale-free topology
methylation
EPIC
scale-free topology
WGCNA
updated 2.7 years ago by
Peter Langfelder
★ 2.6k • written 2.7 years ago by
enora.fremy
• 0
0
votes
1
reply
657
views
How to analyse 450k and EPIC methylation data together?
minfi
450k
EPIC
analysis
updated 2.7 years ago by
James W. MacDonald
59k • written 2.7 years ago by
maduran
• 0
0
votes
3
replies
504
views
Limma for cell components effect on response
450k
EPIC
minfi
limma
cell components
updated 2.9 years ago by
Aaron Lun
★ 27k • written 2.9 years ago by
antgomo
• 0
1
vote
3
replies
553
views
Obtaining annotated results from rnbeads
rnbeads
EPIC
updated 2.9 years ago by
mscherer
▴ 50 • written 3.0 years ago by
Mark Dunning
★ 1.1k
0
votes
0
replies
444
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
3.2 years ago
rmf
▴ 20
0
votes
0
replies
409
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
3.2 years ago
rmf
▴ 20
2
votes
1
reply
672
views
EPIC methylation array - analysis with ChAMP - how to export bed/wig file to view in UCSC/IGV?
methylation
epic
champ
updated 3.5 years ago by
Yuan Tian
▴ 250 • written 3.5 years ago by
D
• 0
0
votes
2
replies
1.1k
views
ChAMP Normalization on EPIC Methylation Data
ChAMP
Normalization
FunctionalNormalization
methylation
EPIC
3.6 years ago
yuabrahamliu
• 0
5
votes
9
replies
802
views
limma Multi-level Experiments correcting for continuous covariates
limma
epic
methylation
limma design matrix
covariates
updated 3.7 years ago by
Aaron Lun
★ 27k • written 3.7 years ago by
c.bettencourt
• 0
0
votes
0
replies
419
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
3.7 years ago
peter.fransquet
• 0
0
votes
3
replies
825
views
Minfi error when using force=TRUE in read.metharray
minfi
methylation
epic
3.8 years ago
jbar3141
• 0
0
votes
0
replies
626
views
Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
minfi
methylation
EPIC
3.8 years ago
sichan
• 0
2
votes
3
replies
956
views
"Seems your IDAT file not from one Array"
EPIC
methylation
ChAMP
updated 4.1 years ago by
yura.grabovska
▴ 30 • written 4.1 years ago by
david.ch
• 0
0
votes
2
replies
1.1k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 5.0 years ago by
Guido Hooiveld
★ 3.2k • written 5.0 years ago by
Ellen O
• 0
1
vote
3
replies
930
views
coef in dmrcate
dmrcate
bumphunter
methylation
epic
updated 5.1 years ago by
James W. MacDonald
59k • written 5.1 years ago by
yoursbassanio
▴ 10
0
votes
3
replies
1.2k
views
Unknown annotation in the RGChannelSetExtended object
minfi
idat
annotation
EPIC
updated 5.2 years ago by
xue.zhang
• 0 • written 5.2 years ago by
Frocha
▴ 10
0
votes
5
replies
1.6k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon
methylation
EPIC
normalization
5.4 years ago
Wade Davis
▴ 60
0
votes
0
replies
815
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
5.6 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.3k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
5.7 years ago
Yuan Tian
▴ 90
1
vote
2
replies
985
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi
illuminaio
epic
5.9 years ago
m.van_iterson
▴ 20
0
votes
2
replies
774
views
error using EPIC early access version arrays with minfi
epic
minfi
read.metharray
software error
5.9 years ago
mcastrod
• 0
28 results • Page
1 of 1
Recent ...
Replies
Comment: R: problem with running time-series analysis software: Mfuzz
by
Kevin Blighe
3.5k
Cross-posted: https://www.biostars.org/p/9524023/
Comment: ROC plot for OPLS-DA
by
Eddie
• 0
Hi, That was helpful. Thank you. How to do the same for the testing data?
Comment: ChIP-seq peak annotation to gene in ChIPseeker
by
Gyan Prakash Mishra
• 0
After going through the package, I think all the peaks are annotated to genes irrespective of distance to TSS. There is also another functi…
Comment: lpsymphony compilation trouble
by
Cankun
• 0
It's 2022 and it still works for lpsymphony_1.24.0
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
James W. MacDonald
59k
I fixed this when Bioc 3.13 was the release version, so it should work in 3.14 and the current release. ``` > up <- UniProt.ws() > input …
Votes
A: lpsymphony compilation trouble
Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Awards
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to
James W. MacDonald
59k
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to
Guido Hooiveld
★ 3.2k
Scholar
to
Kevin Blighe
3.5k
Scholar
to
SamGG
▴ 270
Prophet
to
johnmcma
▴ 10
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