Showing : EPIC • reset
0
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2
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211
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Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi minfi microarray epic
17 months ago • updated 10 months ago Nala • 0
2
votes
1
reply
194
views
lumi: Importing Methylation EPIC IDAT files
lumi EPIC Methylation
17 months ago Zach Roe ▴ 10
1
vote
1
reply
181
views
SVA paired samples
SVA EPIC methylation limma
updated 18 months ago by 58k • written 18 months ago by • 0
1
vote
3
replies
279
views
Skewed beta-distribution from Methylation EPIC array data
ChAMP EPIC Illumina Methylation
19 months ago erwin.tomasich ▴ 10
1
vote
1
reply
181
views
Issue with ChAMP DMP.GUI
ChAMP champ methylation EPIC
updated 20 months ago by ▴ 90 • written 20 months ago by • 0
2
votes
16
replies
738
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation epic champ champ.load() Methylation array
updated 20 months ago by ▴ 240 • written 20 months ago by • 0
3
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5
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315
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 23 months ago by 58k • written 23 months ago by ▴ 10
0
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3
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394
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WGCNA soft threshold with methylation data but no scale-free topology
methylation EPIC scale-free topology WGCNA
updated 2.1 years ago by ★ 2.6k • written 2.1 years ago by • 0
0
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1
reply
400
views
How to analyse 450k and EPIC methylation data together?
minfi 450k EPIC analysis
updated 2.1 years ago by 58k • written 2.1 years ago by • 0
0
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3
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314
views
Limma for cell components effect on response
450k EPIC minfi limma cell components
updated 2.2 years ago by ★ 27k • written 2.2 years ago by • 0
1
vote
3
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389
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Obtaining annotated results from rnbeads
rnbeads EPIC
updated 2.3 years ago by ▴ 50 • written 2.3 years ago by ★ 1.1k
0
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0
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318
views
Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
2.5 years ago rmf ▴ 20
0
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0
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306
views
Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
2.5 years ago rmf ▴ 20
2
votes
1
reply
529
views
EPIC methylation array - analysis with ChAMP - how to export bed/wig file to view in UCSC/IGV?
methylation epic champ
updated 2.8 years ago by ▴ 240 • written 2.8 years ago by • 0
0
votes
2
replies
847
views
ChAMP Normalization on EPIC Methylation Data
ChAMP Normalization FunctionalNormalization methylation EPIC
3.0 years ago yuabrahamliu • 0
5
votes
9
replies
666
views
limma Multi-level Experiments correcting for continuous covariates
limma epic methylation limma design matrix covariates
updated 3.0 years ago by ★ 27k • written 3.0 years ago by • 0
0
votes
0
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348
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
3.1 years ago peter.fransquet • 0
0
votes
3
replies
625
views
Minfi error when using force=TRUE in read.metharray
minfi methylation epic
3.1 years ago jbar3141 • 0
0
votes
0
replies
495
views
Interpretation of control strip and beta density plots for Illumina methylation array data using minFi
minfi methylation EPIC
3.2 years ago sichan • 0
2
votes
3
replies
799
views
"Seems your IDAT file not from one Array"
EPIC methylation ChAMP
updated 3.5 years ago by ▴ 20 • written 3.5 years ago by • 0
0
votes
2
replies
954
views
Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 4.4 years ago by ★ 3.0k • written 4.4 years ago by • 0
1
vote
3
replies
838
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 4.4 years ago by 58k • written 4.4 years ago by ▴ 10
0
votes
3
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1.1k
views
Unknown annotation in the RGChannelSetExtended object
minfi idat annotation EPIC
updated 4.5 years ago by • 0 • written 4.6 years ago by ▴ 10
0
votes
5
replies
1.4k
views
Different errors when attempting to normalize using wateRmelon (v1.1.18)
wateRmelon methylation EPIC normalization
4.7 years ago Wade Davis ▴ 60
0
votes
0
replies
726
views
News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
5.0 years ago Yuan Tian ▴ 90
0
votes
1
reply
1.1k
views
News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
5.1 years ago Yuan Tian ▴ 90
1
vote
2
replies
885
views
Problem reading EPIC array data: different bead locations on different EPIC Chips
minfi illuminaio epic
5.2 years ago m.van_iterson ▴ 20
0
votes
2
replies
693
views
error using EPIC early access version arrays with minfi
epic minfi read.metharray software error
5.3 years ago mcastrod • 0
28 results • Page 1 of 1
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Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
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Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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