Here's a few notes from the birds of a feather session at the Bioconductor Developer Day 2017-07-26
Writing papers in Rmarkdown, BiocStyle... (and books, posters)
CRAN package multipanelfigure
knitr: kable (ideally if you then also define your own CSS); xtable
see example in glimma
Titles and captions? pass to kable, and use HTML-style
Caching expensive computations or downloads
knitr ‘cache’ option for chunks
Color palettes for figures
Rcolorbrewer; ggplot2 defaults; viridis, ggthemes, wesanderson, cardigans, dill/beyonce (github)
Convert from markdown to word: pandoc
Bibliography styles for various journals:
rticles package: by RStudio, and for their types of journals; community input for more styles? (should we care about proliferation of arcane citation ‘standards’?)
learnr package by J.J.
Infinite scrolling, e.g. for reading on tablets
Track changes functionality?
For non-technical collaborators:
How to make changes on the rendered HTML and then feed them back?