Biostar Rmarkdown

Showing : Rmarkdown • reset

vote

210

views

ReportingTools RNA-Seq RMarkdown

updated 10 months ago by James W. MacDonald 57k • written 10 months ago by anthony.nash ▴ 20

votes

replies

104

views

BiocWorkflowTools rmarkdown

13 months ago Helena Crowell ▴ 30

vote

replies

303

views

BrowseSeqs DECIPHER notebook rmarkdown

updated 23 months ago by Erik Wright ▴ 150 • written 23 months ago by lauren.fitch • 0

vote

376

views

rmarkdown knitr

updated 2.5 years ago by Aaron Lun ★ 27k • written 2.5 years ago by Keith Hughitt ▴ 140

votes

replies

1.6k

views

package development bioconductor rstudio rmarkdown vignettes

3.7 years ago clarisbaby • 0

votes

replies

1.9k

views

BiocStyle vignettes rmarkdown latex News

4.0 years ago • updated 3.9 years ago Andrzej Oleś ▴ 750

votes

1.7k

views

biocstyle Rmarkdown Tutorial

4.0 years ago Wolfgang Huber 13k

votes

replies

916

views

BiocWorkflowTools rmarkdown

updated 4.1 years ago by Andrzej Oleś ▴ 750 • written 4.1 years ago by Leonardo Collado Torres ▴ 890

votes

replies

12k

views

rmarkdown rstudio knitr

4.8 years ago Jon Bråte ▴ 180

votes

replies

2.3k

views

rmarkdown package updates

updated 4.9 years ago by James W. MacDonald 57k • written 4.9 years ago by tarek.mohamed ▴ 10

10 results • Page 1 of 1

Recent ...

Replies

Comment: Accession ID Conversion and Missing Results by James W. MacDonald 57k

If there were a simple way around this I would have told you rather than explain why it doesn't do what you expect. I mean, what's the prof…

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k

I would set reference levels for all factors in the design.

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Hi, Michael: Really appreciated your input and advice! For the first question, I did used "WT" for my second way of modle setting althoug…

Comment: Error in .testForValidKeys "org.At.tair.db" by James W. MacDonald 57k

I must have hit Enter too soon, so you should come to the support site to see my full answer.

Comment: cannot install edgeR on M1 Mac by flalom • 0

I had the same problem, I followed your answer but with one variation: I did not make the symbolic links, instead I changed the FC in the M…

Votes

C: DESeq2 design formula: single control for multiple conditions [RIP-seq]

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Answer: cannot install edgeR on M1 Mac

Answer: problems about installation of package ‘Rhtslib’, ‘Rsamtools’ ,‘GenomicAlignmen

Awards • All

Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k