Showing : Rmarkdown • reset
2
votes
2
replies
356
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown suppressWarning warning
5 months ago • updated 4 months ago Wolfgang Huber 13k
1
vote
1
reply
449
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 20 months ago by 59k • written 20 months ago by ▴ 20
0
votes
0
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205
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Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools rmarkdown
23 months ago Helena Crowell ▴ 30
1
vote
2
replies
588
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs DECIPHER notebook rmarkdown
updated 2.7 years ago by ▴ 150 • written 2.7 years ago by • 0
1
vote
1
reply
574
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown knitr
updated 3.3 years ago by ★ 27k • written 3.3 years ago by ▴ 150
0
votes
2
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2.2k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
4.5 years ago clarisbaby • 0
10
votes
3
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2.3k
views
News: Updates to BiocStyle formatting
BiocStyle vignettes rmarkdown latex News
4.8 years ago Andrzej Oleś ▴ 750
6
votes
1
reply
2.2k
views
Tutorial: BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle Rmarkdown Tutorial
4.8 years ago Wolfgang Huber 13k
3
votes
2
replies
1.1k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools rmarkdown
updated 4.9 years ago by ▴ 750 • written 4.9 years ago by ▴ 980
3
votes
3
replies
13k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
5.6 years ago Jon Bråte ▴ 190
0
votes
2
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2.6k
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installation of package 'rmarkdown' had non-zero exit status
rmarkdown package updates
updated 5.8 years ago by 59k • written 5.8 years ago by ▴ 10
11 results • Page 1 of 1
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Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by rsnorman • 0
Thanks for the advice! I need to use this particular bacterial strain, but I did locate a more recent annotation for it and that cleared th…
Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI() by shepherl 3.1k
I'm not able to reproduce this. Maybe it was a temporary issue with biomaRt? ``` > makeOrgPackageFromNCBI( + version = "0.1", + …
Comment: CPM after RUVseq by Jess • 0
Ah I think I know where the communication breakdown is occurring. When I think of RUVr, I'm including fitting the preliminary model in edge…
Answer: NMF installation with current R version by shepherl 3.1k
Install the Biobase package ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::ins…
Answer: Creating DESeq object and choosing a contrast by Michael Love 37k
If you've read over the section on interactions and are still confused what these terms mean, I'd recommend consulting with a statistician …
Votes
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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