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Rmarkdown
•
reset
2
votes
2
replies
356
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
5 months ago • updated 4 months ago
Wolfgang Huber
13k
1
vote
1
reply
449
views
Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools
RNA-Seq
RMarkdown
updated 20 months ago by
James W. MacDonald
59k • written 20 months ago by
anthony.nash
▴ 20
0
votes
0
replies
205
views
Author footnotes in BiocWorkflowTools::f1000_article template
BiocWorkflowTools
rmarkdown
23 months ago
Helena Crowell
▴ 30
1
vote
2
replies
588
views
Display BrowseSeqs output in R Notebook?
BrowseSeqs
DECIPHER
notebook
rmarkdown
updated 2.7 years ago by
Erik Wright
▴ 150 • written 2.7 years ago by
lauren.fitch
• 0
1
vote
1
reply
574
views
Best practices for sharing RMarkdown-based supplemental PDFs?
rmarkdown
knitr
updated 3.3 years ago by
Aaron Lun
★ 27k • written 3.3 years ago by
Keith Hughitt
▴ 150
0
votes
2
replies
2.2k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
4.5 years ago
clarisbaby
• 0
10
votes
3
replies
2.3k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
4.8 years ago
Andrzej Oleś
▴ 750
6
votes
1
reply
2.2k
views
Tutorial:
BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle
Rmarkdown
Tutorial
4.8 years ago
Wolfgang Huber
13k
3
votes
2
replies
1.1k
views
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
BiocWorkflowTools
rmarkdown
updated 4.9 years ago by
Andrzej Oleś
▴ 750 • written 4.9 years ago by
Leonardo Collado Torres
▴ 980
3
votes
3
replies
13k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
5.6 years ago
Jon Bråte
▴ 190
0
votes
2
replies
2.6k
views
installation of package 'rmarkdown' had non-zero exit status
rmarkdown
package updates
updated 5.8 years ago by
James W. MacDonald
59k • written 5.8 years ago by
tarek.mohamed
▴ 10
11 results • Page
1 of 1
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Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
rsnorman
• 0
Thanks for the advice! I need to use this particular bacterial strain, but I did locate a more recent annotation for it and that cleared th…
Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
by
shepherl
3.1k
I'm not able to reproduce this. Maybe it was a temporary issue with biomaRt? ``` > makeOrgPackageFromNCBI( + version = "0.1", + …
Comment: CPM after RUVseq
by
Jess
• 0
Ah I think I know where the communication breakdown is occurring. When I think of RUVr, I'm including fitting the preliminary model in edge…
Answer: NMF installation with current R version
by
shepherl
3.1k
Install the Biobase package ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::ins…
Answer: Creating DESeq object and choosing a contrast
by
Michael Love
37k
If you've read over the section on interactions and are still confused what these terms mean, I'd recommend consulting with a statistician …
Votes
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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Guido Hooiveld
★ 3.2k
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Gordon Smyth
45k
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to
Aaron Lun
★ 27k
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to
James W. MacDonald
59k
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Lluís Revilla Sancho
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