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olj23
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@olj23-13714
Last seen 6.6 years ago
Possibly outdated result from listDatabases()
According to the KEGG API docs (which are linked in the function's documentation), the following databases are available:
pathway | brite | module | ko | genome | <org> | vg | ag | compound |
glycan | reaction | rclass | enzyme | disease | drug | dgroup | environ |
genes | ligand | kegg | <medicus> | <outside>
Indeed, calls can be made to any of these databases using keggFind
, keggGet
etc.
However, listDatabases()
returns the following list instead:
[1] "pathway" "brite" "module" "disease" "drug" "environ" "ko" "genome" "compound"
[10] "glycan" "reaction" "rclass" "enzyme" "organism"
Note that:
vg
,ag
,dgroup
,genes
,ligand
are available but not listedorganism
is listed but not available
The function output may require updating.