Showing : KEGGREST • reset
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170
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Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 7 weeks ago by ★ 3.6k • written 7 weeks ago by • 0
0
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2
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416
views
keggList curl::curl_fetch_memory(url, handle = handle) ERROR
URL KEGGREST
3 months ago jonathanlecoy • 0
0
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13
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1.2k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
9 months ago • updated 3 months ago nute11a • 0
0
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3
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497
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ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST ROntoTools KEGG KEGGgraph
9 months ago abf ▴ 30
0
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3
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963
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Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 11 months ago by 3.5k • written 11 months ago by ★ 2.0k
0
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0
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597
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
KEGG KEGGREST keggorthology Metagenomics
2.2 years ago jol.espinoz ▴ 40
2
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1
reply
587
views
GSEA generate genesets
pathway KEGGREST GSEA
updated 2.2 years ago by 3.8k • written 2.2 years ago by • 0
0
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1
reply
990
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 3.1 years ago by 25k • written 3.1 years ago by • 0
0
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2
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595
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how can I find a pathway
kegg KEGGREST
3.5 years ago Bioinformatics ▴ 30
1
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8
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1.4k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 4.3 years ago by 47k • written 4.3 years ago by ▴ 10
3
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4
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4.8k
views
How i can get a list of KEGG pathways and its list of genes?
keggrest
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 10
0
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1
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595
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
5.0 years ago doctor.dee005 • 0
1
vote
9
replies
2.2k
views
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
KEGG keggrest
updated 5.1 years ago by ▴ 10 • written 5.1 years ago by ▴ 20
1
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4
replies
1.6k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 5.2 years ago by • 0
2
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1
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716
views
How can I remove the ellipsis and get the complete sequence and results?
keggrest biostrings
updated 5.4 years ago by 3.5k • written 5.4 years ago by ▴ 10
2
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1
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1.2k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 5.8 years ago by ▴ 50 • written 5.8 years ago by • 0
0
votes
2
replies
1.6k
views
Accessing KEGG (errors w/ KEGGREST)
KEGG keggrest
updated 6.4 years ago by 47k • written 6.4 years ago by • 0
0
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2
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1.0k
views
Retrieve KEGG from protein GI
R KEGG KEGGREST
6.5 years ago felipelira3 • 0
0
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2
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2.4k
views
Get the reactions for a organism using KEGGREST
keggrest
7.1 years ago • updated 7.0 years ago kjboteroo • 0
0
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11
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3.5k
views
Examples from keggList in KEGGREST don't all work
software error keggrest
7.2 years ago Bryan Hanson • 0
0
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1
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1.3k
views
Problem in KEGGREST package function keggConv
KEGGREST keggConv
updated 7.3 years ago by ★ 8.2k • written 7.3 years ago by ▴ 120
2
votes
15
replies
3.0k
views
Timeout error in kegga() using edgeR
edger kegga keggrest
7.4 years ago Likai Mao ▴ 40
1
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1
reply
1.2k
views
KEGGREST fail to fetch human genes link to pathway
keggrest clusterProfiler
updated 7.8 years ago by ★ 8.2k • written 7.8 years ago by ★ 1.2k
0
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2
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6.6k
views
Using Keggrest to convert ncbi gene IDs to kegg orthology and pathway
keggrest kegg keggorthology
updated 8.5 years ago by 63k • written 8.5 years ago by ▴ 100
0
votes
4
replies
2.5k
views
Error: could not find function "plotPCA"
GO affycoretools KEGGREST GO affycoretools KEGGREST
updated 9.0 years ago by 40k • written 9.0 years ago by ▴ 50
0
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1
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1.2k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 9.4 years ago by 63k • written 9.4 years ago by ★ 12k
0
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1
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1.3k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 9.5 years ago by ▴ 1000 • written 9.5 years ago by ▴ 80
0
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0
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1.4k
views
Pathview question
KEGGREST pathview KEGGREST pathview
9.7 years ago Luo Weijun ★ 1.6k
0
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1
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1.5k
views
trouble reading DNA stringset from keggGet function
PROcess KEGGREST PROcess KEGGREST
updated 9.7 years ago by 63k • written 9.7 years ago by ★ 12k
0
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7
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4.2k
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Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 9.7 years ago by ▴ 470 • written 9.7 years ago by ▴ 660
0
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0
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1.4k
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SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
10.3 years ago Tarca, Adi ▴ 570
0
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0
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886
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KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
10.4 years ago Dan Tenenbaum ★ 8.2k
32 results • Page 1 of 1
Recent ...
Replies
Answer: Can VST-transformed community composition data be expressed as relative abundanc by Michael Love 40k
The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…
Comment: How to update a package at Bioconductor by ma79 • 0
thanks, just informed the original maintainer to send an email.
Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k
Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…
Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k
Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20
Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…
Votes
Dispersion plot -Interpretation -DESeq2
Answer: Dispersion Estimates and MA plots
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
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