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News: Ensembl 90 has been released
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gravatar for Thomas Maurel
3 months ago by
Thomas Maurel700
United Kingdom
Thomas Maurel700 wrote:

Dear all

The new Ensembl marts for release 90 are now live on www.ensembl.org.

If you are using biomaRt, you can change your host to access our most recent data:

ensembl_mart_90 <- useEnsembl(biomart=“ensembl")

Ensembl Genes 90

  • Addition of new rodents, Mus Caroli, Pahari and Spretus
  • Addition of new versioned stable ID filter/attribute for Gene, Transcript and Translation
  • Retired Status filters and attributes

Mouse Genes 90

  • Moved Mus Spretus to Ensembl Genes mart 90
  • Retired Status filters and attributes

 

GRCh37 (http://grch37.ensembl.org/index.html)

Ensembl Genes 90

  • Addition of new versioned stable ID filter/attribute for Gene, Transcript and Translation
  • Retired Status filters and attributes

Ensembl Variation 90

  • Updated human variation data

 

You can find the complete list of the changes at http://www.ensembl.org/info/website/news.html

ADD COMMENTlink written 3 months ago by Thomas Maurel700

EnsDb databases for Ensembl 90 will follow soon - stay tuned.

 

cheers, jo

ADD REPLYlink written 3 months ago by Johannes Rainer1.0k
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