Entering edit mode
Hi all!
ensembldb EnsDb databases for 78 species from Ensembl version 90 are now available through AnnotationHub (devel branch).
cheers, jo
> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2017-08-31
> query(ah, c("EnsDb", "v90"))
AnnotationHub with 78 records
# snapshotDate(): 2017-08-31
# $dataprovider: Ensembl
# $species: Ailuropoda Melanoleuca, Anas Platyrhynchos, Anolis Carolinensis,...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
# coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
# rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH57727"]]'
title
AH57727 | Ensembl 90 EnsDb for Anolis Carolinensis
AH57728 | Ensembl 90 EnsDb for Ailuropoda Melanoleuca
AH57729 | Ensembl 90 EnsDb for Astyanax Mexicanus
... ...
AH57802 | Ensembl 90 EnsDb for Vicugna Pacos
AH57803 | Ensembl 90 EnsDb for Xiphophorus Maculatus
AH57804 | Ensembl 90 EnsDb for Xenopus Tropicalis
