Entering edit mode
Hi all!
ensembldb
EnsDb
databases for 78 species from Ensembl version 90 are now available through AnnotationHub
(devel branch).
cheers, jo
> library(AnnotationHub) > ah <- AnnotationHub() snapshotDate(): 2017-08-31 > query(ah, c("EnsDb", "v90")) AnnotationHub with 78 records # snapshotDate(): 2017-08-31 # $dataprovider: Ensembl # $species: Ailuropoda Melanoleuca, Anas Platyrhynchos, Anolis Carolinensis,... # $rdataclass: EnsDb # additional mcols(): taxonomyid, genome, description, # coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags, # rdatapath, sourceurl, sourcetype # retrieve records with, e.g., 'object[["AH57727"]]' title AH57727 | Ensembl 90 EnsDb for Anolis Carolinensis AH57728 | Ensembl 90 EnsDb for Ailuropoda Melanoleuca AH57729 | Ensembl 90 EnsDb for Astyanax Mexicanus ... ... AH57802 | Ensembl 90 EnsDb for Vicugna Pacos AH57803 | Ensembl 90 EnsDb for Xiphophorus Maculatus AH57804 | Ensembl 90 EnsDb for Xenopus Tropicalis