News: ensembl 90 ensembldb EnsDb databases have been added to AnnotationHub
gravatar for Johannes Rainer
2.3 years ago by
Johannes Rainer1.5k
Johannes Rainer1.5k wrote:

Hi all!

ensembldb EnsDb databases for 78 species from Ensembl version 90 are now available through AnnotationHub (devel branch).

cheers, jo

> library(AnnotationHub)
> ah <- AnnotationHub()
snapshotDate(): 2017-08-31
> query(ah, c("EnsDb", "v90"))
AnnotationHub with 78 records
# snapshotDate(): 2017-08-31
# $dataprovider: Ensembl
# $species: Ailuropoda Melanoleuca, Anas Platyrhynchos, Anolis Carolinensis,...
# $rdataclass: EnsDb
# additional mcols(): taxonomyid, genome, description,
#   coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
#   rdatapath, sourceurl, sourcetype
# retrieve records with, e.g., 'object[["AH57727"]]'

  AH57727 | Ensembl 90 EnsDb for Anolis Carolinensis   
  AH57728 | Ensembl 90 EnsDb for Ailuropoda Melanoleuca
  AH57729 | Ensembl 90 EnsDb for Astyanax Mexicanus    
  ...       ...                                        
  AH57802 | Ensembl 90 EnsDb for Vicugna Pacos         
  AH57803 | Ensembl 90 EnsDb for Xiphophorus Maculatus
  AH57804 | Ensembl 90 EnsDb for Xenopus Tropicalis   
ADD COMMENTlink written 2.3 years ago by Johannes Rainer1.5k
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