Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
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I have whole genome seq data from a non-model organism (Bengalese finch - Lonchura striatta domestica), which I've mapped and annotated using another organism for which there's more info available (Zebra finch and . as in KEGG and also supported by PANTHER if I use a customized ref list and use a list of IDs from Reference Proteome Genome

I did some popgen/evo analysis and have couple lists of genes of interests, which I would like to check for functional enrichment.

What would be the optimal way of doing this?

DOSE hypeR goTools GOstats topGO • 111 views

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