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goTools
•
reset
0
votes
2
replies
55
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
13 hours ago • updated 4 hours ago
bandconductor
• 0
0
votes
0
replies
750
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE
hypeR
goTools
GOstats
topGO
3.4 years ago
Madza Farias-Virgens
• 0
0
votes
2
replies
1.8k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription
Microarray
Annotation
GO
goTools
Transcription
Microarray
Annotation
GO
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
Guest User
★ 13k
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways
GO
Cancer
PROcess
goTools
genomes
Pathways
GO
Cancer
PROcess
goTools
genomes
updated 22 months ago by
pengmin.wang.1
• 0 • written 12.2 years ago by
Marc Carlson
★ 7.2k
0
votes
9
replies
1.8k
views
ontoCompare (goTools) : goidvect error
GO
goTools
GO
goTools
12.7 years ago
Oana VIGY
▴ 80
0
votes
2
replies
1.9k
views
help in downloading some packages.
goTools
sigPathway
topGO
goTools
sigPathway
topGO
updated 13.6 years ago by
Michael Dondrup
▴ 550 • written 13.6 years ago by
Veerendra GP
▴ 100
0
votes
0
replies
848
views
goTools question
probe
goTools
probe
goTools
13.6 years ago
Pete Shepard
▴ 240
0
votes
0
replies
965
views
obtaining GOID from nuID
GO
goTools
lumi
GO
goTools
lumi
14.3 years ago
Md.Mamunur Rashid
▴ 260
0
votes
1
reply
1.0k
views
question about ontoCompare() performance change
Transcription
GO
hgu133a
goTools
Transcription
GO
hgu133a
goTools
updated 14.5 years ago by
Seth Falcon
★ 7.4k • written 14.5 years ago by
Scott Markel
▴ 50
0
votes
0
replies
740
views
question about ontoCompare() performance change
GO
PROcess
goTools
GO
PROcess
goTools
14.8 years ago
Oana VIGY
▴ 80
0
votes
1
reply
1.2k
views
(no subject)
Pathways
Clustering
goTools
GOstats
Pathways
Clustering
goTools
GOstats
updated 14.8 years ago by
anupam sinha
▴ 270 • written 14.8 years ago by
McGee, Monnie
▴ 300
0
votes
1
reply
1.1k
views
question about ontoCompare() performance change
Transcription
GO
hgu133a
goTools
Transcription
GO
hgu133a
goTools
updated 14.9 years ago by
Jean-Pierre Desvignes
▴ 60 • written 14.9 years ago by
Scott Markel
▴ 50
0
votes
4
replies
1.4k
views
error with ontoCompare (goTools)
GO
hgu133a
graph
goTools
GO
hgu133a
graph
goTools
updated 15.3 years ago by
Alex Sanchez
▴ 90 • written 15.3 years ago by
Wolfgang Raffelsberger
▴ 160
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.5 years ago by
Dykema, Karl
▴ 90 • written 15.5 years ago by
Mark W Kimpel
▴ 830
0
votes
0
replies
774
views
goTools package - extract genes
GO
probe
goTools
GO
probe
goTools
15.9 years ago
Anne Dirks Højfeldt / Region Nordjylland
▴ 10
0
votes
1
reply
884
views
Reporting results of HyperGTest
GO
goTools
GO
goTools
updated 16.0 years ago by
Pankaj Chopra
▴ 20 • written 16.0 years ago by
Paolo Innocenti
▴ 320
0
votes
1
reply
1.0k
views
Arabidopsis GO Pie Charts
goTools
Category
goTools
Category
16.5 years ago
Naomi Altman
★ 6.0k
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 16.6 years ago by
Steffen
▴ 500 • written 16.6 years ago by
Dick Beyer
★ 1.4k
0
votes
3
replies
1.3k
views
GO terms not found in goTools and GO
GO
Biobase
annotate
goTools
biomaRt
GO
Biobase
annotate
goTools
biomaRt
updated 16.8 years ago by
Seth Falcon
★ 7.4k • written 16.8 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
0
replies
1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray
GO
graph
goTools
Category
oligo
Microarray
GO
graph
goTools
Category
oligo
17.0 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
915
views
question about the value retured by function ontoCompare()
GO
hgu133a
probe
PROcess
goTools
oligo
GO
hgu133a
probe
PROcess
goTools
oligo
17.2 years ago
Paquet, Agnes
▴ 500
0
votes
1
reply
863
views
problems with library goCluster
GO
goTools
GOstats
goCluster
GO
goTools
GOstats
goCluster
updated 17.3 years ago by
James W. MacDonald
65k • written 17.3 years ago by
Caroline Reiff
▴ 40
0
votes
1
reply
855
views
Using ontoCompare with local GO database
GO
goTools
GO
goTools
updated 17.3 years ago by
Paquet, Agnes
▴ 500 • written 17.3 years ago by
Alessandro Bruselles
▴ 100
0
votes
1
reply
1.0k
views
goTools problem
goTools
oligo
goTools
oligo
updated 17.3 years ago by
Paquet, Agnes
▴ 500 • written 17.3 years ago by
Jorrit Boekel
▴ 30
0
votes
1
reply
1.2k
views
GO annotation/analysis for ath1121501
Annotation
GO
ath1121501
goTools
GOstats
biomaRt
Annotation
GO
ath1121501
goTools
updated 17.7 years ago by
Nianhua Li
▴ 870 • written 17.7 years ago by
Ann Hess
▴ 340
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray
GO
affy
PROcess
goTools
GOstats
Microarray
GO
affy
PROcess
goTools
GOstats
18.2 years ago
michael watson IAH-C
★ 3.4k
0
votes
2
replies
1.0k
views
GO Tools
GO
goTools
GO
goTools
19.0 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
878
views
GO Tools
goTools
goTools
19.0 years ago
Mayte Suarez-Farinas
▴ 300
0
votes
1
reply
886
views
annotation packages and goTools
Annotation
moe430a
moe430b
goTools
Annotation
moe430a
moe430b
goTools
updated 19.2 years ago by
John Zhang
★ 2.9k • written 19.2 years ago by
Straubhaar, Juerg
▴ 300
0
votes
2
replies
1.1k
views
goTools and plot and go group names
GO
graph
goTools
GO
graph
goTools
updated 19.7 years ago by
Paquet, Agnes
▴ 500 • written 19.7 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
1
reply
1.3k
views
GOtools: argument is of length zero
goTools
goTools
updated 19.7 years ago by
Paquet, Agnes
▴ 500 • written 19.7 years ago by
Dr Gyorffy Balazs
▴ 320
31 results • Page
1 of 1
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Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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