Showing : topGO • reset
1
vote
2
replies
592
views
Access genes associated with GO terms for a topGO object created with gene2GO
topGO
3 months ago Dan • 0
0
votes
2
replies
567
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
1
reply
541
views
library(topGO) query
topGO scRNAseq
updated 8 months ago by ▴ 750 • written 8 months ago by • 0
1
vote
1
reply
536
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 11 months ago by ▴ 40 • written 11 months ago by • 0
0
votes
1
reply
739
views
In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 11 months ago by 65k • written 11 months ago by • 0
0
votes
0
replies
442
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
12 months ago Priya • 0
1
vote
1
reply
1.0k
views
topGo error loading data
topGO GO
15 months ago peter • 0
1
vote
0
replies
773
views
adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
19 months ago Kevin Gregory ▴ 10
0
votes
4
replies
2.5k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 21 months ago by ▴ 730 • written 21 months ago by ▴ 10
1
vote
3
replies
1.6k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 21 months ago by 65k • written 22 months ago by ▴ 60
0
votes
5
replies
1.9k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 22 months ago by 65k • written 22 months ago by ▴ 10
0
votes
0
replies
571
views
What exactly are Nontrivial node in topGO analysis?
topGO GO
2.0 years ago theophile • 0
0
votes
6
replies
1.4k
views
extract significant gene list from specific GO namber
topGO
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
4
votes
7
replies
1.9k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 2.2 years ago by ▴ 150 • written 2.2 years ago by • 0
0
votes
1
reply
1.0k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.6 years ago by ▴ 40 • written 2.6 years ago by • 0
0
votes
1
reply
827
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
0
votes
1
reply
829
views
topGo GenTable returns result column as character
GenTable topGO
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
votes
0
replies
635
views
topGO weight01 method: potential bug in the code
topGO weight01
3.2 years ago Vladimir • 0
1
vote
3
replies
1.3k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.2 years ago by ▴ 730 • written 3.2 years ago by • 0
2
votes
0
replies
915
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.2 years ago Ben ▴ 50
1
vote
1
reply
1.6k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 3.2 years ago by 65k • written 3.2 years ago by • 0
2
votes
1
reply
1.9k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.3 years ago by ▴ 20 • written 11.1 years ago by ▴ 340
1
vote
3
replies
1.3k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 3.3 years ago by 65k • written 3.3 years ago by • 0
0
votes
0
replies
746
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
0
votes
7
replies
2.3k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 3.4 years ago by 50k • written 3.4 years ago by ▴ 20
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
1
vote
6
replies
1.4k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 3.6 years ago by 65k • written 3.6 years ago by • 0
3
votes
4
replies
1.6k
views
Different geneset same p-values in topGO
topgo bug
7.2 years ago • updated 3.6 years ago Lluís Revilla Sancho ▴ 730
4
votes
4
replies
1.3k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 3.6 years ago by 50k • written 3.6 years ago by ▴ 120
2
votes
3
replies
1.1k
views
Error in topGO analysis
software error topGO go
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by • 0
0
votes
3
replies
939
views
Use topGOdata in devtools package
topGO devtools R
updated 3.7 years ago by 65k • written 3.7 years ago by • 0
1
vote
1
reply
1.1k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 10
4
votes
8
replies
5.7k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by ▴ 10
4
votes
8
replies
2.1k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 14 months ago by 65k • written 3.9 years ago by ▴ 30
5
votes
7
replies
1.1k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
3.9 years ago abf ▴ 30
0
votes
1
reply
660
views
Missing ALL library in BiocManager using topGO
topGO
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
1
vote
3
replies
1.5k
views
TopGO significant genes
TopGO GO
4.0 years ago Al-a ▴ 10
0
votes
14
replies
2.2k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
0
votes
1
reply
870
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
4.7 years ago s.bourne • 0
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.8 years ago by 65k • written 4.8 years ago by • 0
2
votes
2
replies
2.1k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 4.9 years ago by 65k • written 4.9 years ago by ▴ 60
0
votes
3
replies
1.3k
views
usage of topGO after limma
limma topGO microarray
updated 5.0 years ago by 50k • written 5.0 years ago by • 0
0
votes
0
replies
1.1k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
5.1 years ago psutton • 0
1
vote
1
reply
1.1k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.2 years ago David ROUX ▴ 20
0
votes
1
reply
1.5k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.3 years ago natske ▴ 10
2
votes
6
replies
1.9k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
3
votes
9
replies
4.7k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
0
votes
0
replies
1.1k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
5.5 years ago Dave Th. • 0
0
votes
0
replies
1.2k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
5.6 years ago anton.kratz ▴ 60
0
votes
4
replies
1.7k
views
How do you specify "chip" in printGenes of TopGO for maize data
TopGo printGenes
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…
Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k
You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…
Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10
I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.
Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690
Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…
Votes
Comment: [DiffBind] Obtaining normalization factors
Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Answer: GSVA error
Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
Jerusalem, just now
Spain, 1 minute ago
United Kingdom, 1 minute ago
France, 3 minutes ago
UPF, Barcelona, Spain, 5 minutes ago
Traffic: 745 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6