Showing : GOstats • reset
1
vote
3
replies
474
views
GOstats - are significantly enriched GO terms with a small "size" meaningful?
GOstats GO RNASeq
updated 6 months ago by 60k • written 6 months ago by ▴ 10
1
vote
2
replies
377
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
14 months ago MOHAMMAD • 0
0
votes
0
replies
293
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
18 months ago Madza Farias-Virgens • 0
0
votes
1
reply
306
views
incorrect number of dimensions in probeSetSummary function from GOstats
GOstats GO R
updated 23 months ago by 60k • written 23 months ago by ▴ 10
3
votes
4
replies
684
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
3.0 years ago Matthew Thornton ▴ 350
0
votes
5
replies
763
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 3.2 years ago by 60k • written 3.2 years ago by • 0
2
votes
2
replies
655
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 3.8 years ago by 25k • written 3.8 years ago by • 0
0
votes
2
replies
539
views
comparing two GOstats result lists
gostats statistics
updated 4.0 years ago by 60k • written 4.0 years ago by ▴ 20
3
votes
10
replies
716
views
GO Stats results contain GO terms NOT present in the gene universe
gostats
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
how to run GO enrichment analysis for non-model organisms (errors when using hyperGTest)
gostats GO non_model
4.1 years ago zhaoran1124 • 0
0
votes
0
replies
620
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
4.2 years ago crafy • 0
0
votes
0
replies
569
views
invalid names for slots of class GOHyperGResult
gostats
4.5 years ago laianavarromartin ▴ 20
0
votes
6
replies
834
views
GO-terms delivered by GOstats hyperGTest() do not exist in my universe
GOstats
4.6 years ago martis.mihaela • 0
0
votes
1
reply
688
views
Add gene information to most expressed gene list (packages lumi and GOstats)
annotation lumi GOstats
updated 4.7 years ago by 60k • written 4.7 years ago by • 0
0
votes
0
replies
552
views
Question: Enrichment heatmap - GOstats package of R
Gostats p-value
4.9 years ago salamandra ▴ 20
0
votes
1
reply
583
views
GOstats R Package
gostats
4.9 years ago arpa530 • 0
0
votes
0
replies
732
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
5.3 years ago avinash gupta ▴ 130
4
votes
2
replies
991
views
Why do I get different GO term sizes using the same gene universe for 2 analyses with GOstats?
gostats hypergeometric test
updated 5.3 years ago by 60k • written 5.3 years ago by ▴ 10
6
votes
6
replies
2.4k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 5.3 years ago by ▴ 10 • written 6.0 years ago by ▴ 300
2
votes
9
replies
3.0k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 5.5 years ago by 25k • written 5.6 years ago by ▴ 660
1
vote
2
replies
825
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 5.8 years ago by 60k • written 5.8 years ago by • 0
2
votes
1
reply
755
views
Is possible to use an organism annotation package in simLL function?
gostats
updated 5.8 years ago by 60k • written 5.8 years ago by ▴ 660
0
votes
4
replies
863
views
Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 5.9 years ago by 60k • written 5.9 years ago by ▴ 20
0
votes
1
reply
2.9k
views
GOstats - Error in order(pvals) : argument 1 is not a vector
bioconductor r gostats
updated 5.9 years ago by 60k • written 5.9 years ago by • 0
0
votes
2
replies
769
views
broken link to www.godatabase.org in results generated by htmlReport() from GOstats package ?
GOstats www.godatabase.org htmlReport
5.9 years ago c.kohler • 0
0
votes
3
replies
1.4k
views
Can not install 'affyio' with compiler icc on redhat linux ES5
GOstats GOstats
updated 5.9 years ago by ▴ 10 • written 11.5 years ago by ▴ 10
0
votes
1
reply
817
views
Problem with GOstats - invalid names for slots of class GOHyperGResult
GOstat GOstats
6.0 years ago ccanchaya • 0
0
votes
2
replies
2.2k
views
Odd Odds Ratio in GOstats package
GO GOstats GO GOstats
updated 6.1 years ago by • 0 • written 8.1 years ago by ▴ 10
0
votes
0
replies
919
views
Annotation, Over representation testing and Pathway analysis using Ensembl gene IDs
rnaseq annotation gostats org.Bt.eg.db
6.2 years ago mrodrigues.fernanda ▴ 10
13
votes
2
replies
3.3k
views
Best method/package for Gene Set Enrichment Analysis in microarrays?
GSEA goseq topgo gega gostats
updated 6.5 years ago by ★ 2.9k • written 6.5 years ago by ▴ 40
1
vote
0
replies
972
views
enrichment analysis for gene pairs
go gostats category gsea
6.6 years ago Hector Corrada Bravo ▴ 60
1
vote
1
reply
918
views
GoStats Hit Counter for website
gostats gostat
updated 6.6 years ago by ★ 8.2k • written 6.6 years ago by • 0
0
votes
1
reply
860
views
GOstats and termGraph - Getting all of the plots out of the list
gostats rgraphviz
updated 6.8 years ago by ★ 6.7k • written 6.8 years ago by • 0
0
votes
0
replies
885
views
hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
6.8 years ago petyuk ▴ 70
0
votes
2
replies
713
views
Conditional test for goseq?
goseq gostats
updated 6.8 years ago by 45k • written 6.8 years ago by ★ 1.9k
0
votes
8
replies
1.4k
views
PFAM Enrichment in GOstats
PFAM Category GOstats
updated 7.0 years ago by ★ 1.2k • written 7.0 years ago by ▴ 930
1
vote
2
replies
886
views
Mysterious warning message: "...in .local... ignoring 'pos' argument
warnings gostats
updated 7.1 years ago by 60k • written 7.1 years ago by • 0
0
votes
1
reply
668
views
Alien GO result from GOstats
gostats
7.1 years ago Yue Zhao • 0
0
votes
3
replies
983
views
Genes corresponding to GO terms for unsupported organsims
gostats unsupported organisms
updated 7.2 years ago by ★ 7.2k • written 7.2 years ago by ▴ 270
1
vote
10
replies
1.5k
views
Filtering genes for GOstats
gostats
7.3 years ago nonCodingGene ▴ 10
0
votes
1
reply
1.2k
views
Customized GO enrichment with GOstat
GOstats
updated 7.3 years ago by 60k • written 7.3 years ago by • 0
0
votes
6
replies
1.7k
views
hyperGTest interpretation of 'under' and finding all Entrez associated with a GO term
Annotation GO gostats
updated 7.5 years ago by 45k • written 9.6 years ago by ▴ 70
0
votes
2
replies
1.3k
views
Incomplete gene IDs in KEGG pathway testing
gostats kegg
updated 7.5 years ago by 60k • written 7.5 years ago by • 0
3
votes
3
replies
1.6k
views
GOstats "count" question
gostats
updated 7.6 years ago by 60k • written 7.6 years ago by ▴ 10
4
votes
3
replies
2.0k
views
Select the annotation level during GO enrichment
topgo gostats go
updated 7.7 years ago by 60k • written 7.7 years ago by ▴ 80
0
votes
0
replies
1.8k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
7.7 years ago Luo Weijun ★ 1.5k
0
votes
0
replies
1.2k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
7.7 years ago Guest User ★ 12k
0
votes
2
replies
859
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 8.0 years ago by 60k • written 8.0 years ago by ★ 12k
0
votes
5
replies
1.0k
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 8.2 years ago by 60k • written 8.2 years ago by ★ 12k
0
votes
3
replies
2.1k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
8.2 years ago Christine Gläßer ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Comment: Italicise by Pau • 0
They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0
Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.
Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0
I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…
Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…
Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0
Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…
Votes
Answer: DESeq2 how to specify contrast to test difference of differences
Comment: DESeq2 how to specify contrast to test difference of differences
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
Answer: biomaRt error unable to fix: need help troubleshooting
Answer: edgeR : results from goana and kegga functions show opposite sig. p-value
Awards • All
Scholar to Nicole • 0
Teacher to Michael Love 37k
Popular Question to svlachavas ▴ 780
Popular Question to Gordon Smyth 45k
Scholar to Rory Stark ★ 4.4k
Locations • All
United States, 36 minutes ago
WEHI, Melbourne, Australia, 48 minutes ago
Qatar, 55 minutes ago
The city by the bay, 1 hour ago
Zheng Zhou, 2 hours ago
Traffic: 147 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6