Showing : GOstats • reset
1
vote
2
replies
205
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
6 months ago MOHAMMAD • 0
0
votes
0
replies
159
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
9 months ago Madza Farias-Virgens • 0
0
votes
1
reply
180
views
incorrect number of dimensions in probeSetSummary function from GOstats
GOstats GO R
updated 15 months ago by 58k • written 15 months ago by ▴ 10
3
votes
4
replies
510
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
2.4 years ago • updated 2.3 years ago Matthew Thornton ▴ 330
0
votes
5
replies
591
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 2.5 years ago by 58k • written 2.5 years ago by • 0
2
votes
2
replies
471
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 3.1 years ago by 25k • written 3.1 years ago by • 0
0
votes
2
replies
452
views
comparing two GOstats result lists
gostats statistics
updated 3.3 years ago by 58k • written 3.3 years ago by ▴ 10
3
votes
10
replies
588
views
GO Stats results contain GO terms NOT present in the gene universe
gostats
updated 3.3 years ago by • 0 • written 3.3 years ago by ▴ 10
0
votes
1
reply
913
views
how to run GO enrichment analysis for non-model organisms (errors when using hyperGTest)
gostats GO non_model
3.4 years ago zhaoran1124 • 0
0
votes
0
replies
490
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
3.5 years ago crafy • 0
0
votes
0
replies
477
views
invalid names for slots of class GOHyperGResult
gostats
3.8 years ago laianavarromartin ▴ 20
0
votes
6
replies
688
views
GO-terms delivered by GOstats hyperGTest() do not exist in my universe
GOstats
3.9 years ago martis.mihaela • 0
0
votes
1
reply
600
views
Add gene information to most expressed gene list (packages lumi and GOstats)
annotation lumi GOstats
updated 4.0 years ago by 58k • written 4.0 years ago by • 0
0
votes
0
replies
485
views
Question: Enrichment heatmap - GOstats package of R
Gostats p-value
4.2 years ago salamandra ▴ 20
0
votes
1
reply
507
views
GOstats R Package
gostats
4.2 years ago arpa530 • 0
0
votes
0
replies
669
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
4.6 years ago avinash gupta ▴ 130
4
votes
2
replies
847
views
Why do I get different GO term sizes using the same gene universe for 2 analyses with GOstats?
gostats hypergeometric test
updated 4.6 years ago by 58k • written 4.6 years ago by ▴ 10
6
votes
6
replies
2.2k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 4.6 years ago by ▴ 10 • written 5.3 years ago by ▴ 290
2
votes
9
replies
2.5k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 4.8 years ago by 25k • written 4.9 years ago by ▴ 650
1
vote
2
replies
728
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 5.1 years ago by 58k • written 5.1 years ago by • 0
2
votes
1
reply
666
views
Is possible to use an organism annotation package in simLL function?
gostats
updated 5.1 years ago by 58k • written 5.1 years ago by ▴ 650
0
votes
4
replies
740
views
Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 5.2 years ago by 58k • written 5.2 years ago by ▴ 20
0
votes
1
reply
2.4k
views
GOstats - Error in order(pvals) : argument 1 is not a vector
bioconductor r gostats
updated 5.2 years ago by 58k • written 5.2 years ago by • 0
0
votes
2
replies
706
views
broken link to www.godatabase.org in results generated by htmlReport() from GOstats package ?
GOstats www.godatabase.org htmlReport
5.2 years ago c.kohler • 0
0
votes
3
replies
1.2k
views
Can not install 'affyio' with compiler icc on redhat linux ES5
GOstats GOstats
updated 5.2 years ago by ▴ 10 • written 10.8 years ago by ▴ 10
0
votes
1
reply
729
views
Problem with GOstats - invalid names for slots of class GOHyperGResult
GOstat GOstats
5.3 years ago ccanchaya • 0
0
votes
2
replies
2.0k
views
Odd Odds Ratio in GOstats package
GO GOstats GO GOstats
updated 5.5 years ago by • 0 • written 7.4 years ago by ▴ 10
0
votes
0
replies
837
views
Annotation, Over representation testing and Pathway analysis using Ensembl gene IDs
rnaseq annotation gostats org.Bt.eg.db
5.5 years ago mrodrigues.fernanda ▴ 10
13
votes
2
replies
3.0k
views
Best method/package for Gene Set Enrichment Analysis in microarrays?
GSEA goseq topgo gega gostats
updated 5.8 years ago by ★ 2.7k • written 5.8 years ago by ▴ 40
1
vote
0
replies
906
views
enrichment analysis for gene pairs
go gostats category gsea
5.9 years ago Hector Corrada Bravo ▴ 60
1
vote
1
reply
842
views
GoStats Hit Counter for website
gostats gostat
updated 6.0 years ago by ★ 8.2k • written 6.0 years ago by • 0
0
votes
1
reply
768
views
GOstats and termGraph - Getting all of the plots out of the list
gostats rgraphviz
updated 6.1 years ago by ★ 6.7k • written 6.1 years ago by • 0
0
votes
0
replies
803
views
hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
6.1 years ago petyuk ▴ 70
0
votes
2
replies
653
views
Conditional test for goseq?
goseq gostats
updated 6.1 years ago by 43k • written 6.2 years ago by ★ 1.9k
0
votes
8
replies
1.2k
views
PFAM Enrichment in GOstats
PFAM Category GOstats
updated 6.4 years ago by ★ 1.2k • written 6.4 years ago by ▴ 930
1
vote
2
replies
805
views
Mysterious warning message: "...in .local... ignoring 'pos' argument
warnings gostats
updated 6.4 years ago by 58k • written 6.4 years ago by • 0
0
votes
1
reply
609
views
Alien GO result from GOstats
gostats
6.4 years ago Yue Zhao • 0
0
votes
3
replies
883
views
Genes corresponding to GO terms for unsupported organsims
gostats unsupported organisms
updated 6.5 years ago by ★ 7.2k • written 6.5 years ago by ▴ 270
1
vote
10
replies
1.3k
views
Filtering genes for GOstats
gostats
6.6 years ago nonCodingGene ▴ 10
0
votes
1
reply
1.1k
views
Customized GO enrichment with GOstat
GOstats
updated 6.6 years ago by 58k • written 6.6 years ago by • 0
0
votes
6
replies
1.3k
views
hyperGTest interpretation of 'under' and finding all Entrez associated with a GO term
Annotation GO gostats
updated 6.8 years ago by 43k • written 8.9 years ago by ▴ 70
0
votes
2
replies
1.2k
views
Incomplete gene IDs in KEGG pathway testing
gostats kegg
updated 6.8 years ago by 58k • written 6.9 years ago by • 0
3
votes
3
replies
1.5k
views
GOstats "count" question
gostats
updated 6.9 years ago by 58k • written 6.9 years ago by ▴ 10
4
votes
3
replies
1.8k
views
Select the annotation level during GO enrichment
topgo gostats go
updated 7.0 years ago by 58k • written 7.0 years ago by ▴ 80
0
votes
0
replies
1.7k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
7.0 years ago Luo Weijun ★ 1.5k
0
votes
0
replies
1.1k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
7.0 years ago Guest User ★ 12k
0
votes
2
replies
773
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 7.3 years ago by 58k • written 7.3 years ago by ★ 12k
0
votes
5
replies
888
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 7.5 years ago by 58k • written 7.5 years ago by ★ 12k
0
votes
3
replies
2.0k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
7.5 years ago Christine Gläßer ▴ 60
0
votes
4
replies
2.0k
views
Identifying Processes as Upregulated or Downregulated
PROcess GOstats PROcess GOstats
updated 7.6 years ago by 58k • written 7.6 years ago by ▴ 100
50 results • Page 1 of 1
Recent ...
Replies
Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
Cross posted to Biostars https://www.biostars.org/p/9490039/
Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…
Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k
The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.
Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k
The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …
Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850
Cross posted at Biostars: https://www.biostars.org/p/9490151/
Votes
Answer: Effect size using likelihood ratio test in DESeq2
Comment: ggtree install
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
Awards • All
Popular Question to Hans-Ulrich Klein ▴ 330
Popular Question to Hervé Pagès 15k
Scholar to Jiang, Mike ★ 1.3k
Popular Question to James W. MacDonald 58k
Teacher to Vincent J. Carey, Jr. 6.5k
Locations • All
WEHI, Melbourne, Australia, 1 minute ago
Russia, 10 minutes ago
San Diego, 1 hour ago
Hong Kong, 1 hour ago
The city by the bay, 1 hour ago
Traffic: 244 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6