Showing : GOstats • reset
1
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2
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131
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Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3 months ago MOHAMMAD • 0
0
votes
0
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110
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
6 months ago Madza Farias-Virgens • 0
0
votes
1
reply
117
views
incorrect number of dimensions in probeSetSummary function from GOstats
GOstats GO R
updated 12 months ago by 57k • written 12 months ago by ▴ 10
3
votes
4
replies
421
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
2.1 years ago Matthew Thornton ▴ 330
0
votes
5
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508
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 2.3 years ago by 57k • written 2.3 years ago by • 0
2
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2
replies
404
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 2.9 years ago by 25k • written 2.9 years ago by • 0
0
votes
2
replies
402
views
comparing two GOstats result lists
gostats statistics
updated 3.0 years ago by 57k • written 3.0 years ago by ▴ 10
3
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10
replies
520
views
GO Stats results contain GO terms NOT present in the gene universe
gostats
updated 3.1 years ago by • 0 • written 3.1 years ago by ▴ 10
0
votes
1
reply
834
views
how to run GO enrichment analysis for non-model organisms (errors when using hyperGTest)
gostats GO non_model
3.2 years ago zhaoran1124 • 0
0
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0
replies
453
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
3.3 years ago crafy • 0
0
votes
0
replies
443
views
invalid names for slots of class GOHyperGResult
gostats
3.6 years ago laianavarromartin ▴ 20
0
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6
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616
views
GO-terms delivered by GOstats hyperGTest() do not exist in my universe
GOstats
3.6 years ago martis.mihaela • 0
0
votes
1
reply
525
views
Add gene information to most expressed gene list (packages lumi and GOstats)
annotation lumi GOstats
updated 3.7 years ago by 57k • written 3.7 years ago by • 0
0
votes
0
replies
449
views
Question: Enrichment heatmap - GOstats package of R
Gostats p-value
3.9 years ago salamandra • 0
0
votes
1
reply
466
views
GOstats R Package
gostats
3.9 years ago arpa530 • 0
0
votes
0
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629
views
Pathway analysis for diffrential express gene
pathways gage annotation gostats
4.3 years ago avinash gupta ▴ 130
4
votes
2
replies
787
views
Why do I get different GO term sizes using the same gene universe for 2 analyses with GOstats?
gostats hypergeometric test
updated 4.3 years ago by 57k • written 4.3 years ago by ▴ 10
6
votes
6
replies
2.0k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound)
Gostats go term annotation drosophila melanogaster error
updated 4.3 years ago by ▴ 10 • written 5.0 years ago by ▴ 290
2
votes
9
replies
2.4k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 640
1
vote
2
replies
686
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 4.9 years ago by 57k • written 4.9 years ago by • 0
2
votes
1
reply
592
views
Is possible to use an organism annotation package in simLL function?
gostats
updated 4.9 years ago by 57k • written 4.9 years ago by ▴ 640
0
votes
4
replies
702
views
Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 5.0 years ago by 57k • written 5.0 years ago by ▴ 20
0
votes
1
reply
2.4k
views
GOstats - Error in order(pvals) : argument 1 is not a vector
bioconductor r gostats
updated 5.0 years ago by 57k • written 5.0 years ago by • 0
0
votes
2
replies
662
views
broken link to www.godatabase.org in results generated by htmlReport() from GOstats package ?
GOstats www.godatabase.org htmlReport
5.0 years ago c.kohler • 0
0
votes
3
replies
1.2k
views
Can not install 'affyio' with compiler icc on redhat linux ES5
GOstats GOstats
updated 5.0 years ago by ▴ 10 • written 10.6 years ago by ▴ 10
0
votes
1
reply
650
views
Problem with GOstats - invalid names for slots of class GOHyperGResult
GOstat GOstats
5.0 years ago ccanchaya • 0
0
votes
2
replies
2.0k
views
Odd Odds Ratio in GOstats package
GO GOstats GO GOstats
updated 5.2 years ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
0
replies
809
views
Annotation, Over representation testing and Pathway analysis using Ensembl gene IDs
rnaseq annotation gostats org.Bt.eg.db
5.2 years ago mrodrigues.fernanda ▴ 10
13
votes
2
replies
3.0k
views
Best method/package for Gene Set Enrichment Analysis in microarrays?
GSEA goseq topgo gega gostats
updated 5.6 years ago by ★ 2.7k • written 5.6 years ago by ▴ 40
1
vote
0
replies
874
views
enrichment analysis for gene pairs
go gostats category gsea
5.7 years ago Hector Corrada Bravo ▴ 60
1
vote
1
reply
808
views
GoStats Hit Counter for website
gostats gostat
updated 5.7 years ago by ★ 8.2k • written 5.7 years ago by • 0
0
votes
1
reply
723
views
GOstats and termGraph - Getting all of the plots out of the list
gostats rgraphviz
updated 5.8 years ago by ★ 6.7k • written 5.9 years ago by • 0
0
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0
replies
768
views
hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
5.9 years ago petyuk ▴ 70
0
votes
2
replies
625
views
Conditional test for goseq?
goseq gostats
updated 5.9 years ago by 43k • written 5.9 years ago by ★ 1.9k
0
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8
replies
1.2k
views
PFAM Enrichment in GOstats
PFAM Category GOstats
updated 6.1 years ago by ★ 1.2k • written 6.1 years ago by ▴ 930
1
vote
2
replies
763
views
Mysterious warning message: "...in .local... ignoring 'pos' argument
warnings gostats
updated 6.2 years ago by 57k • written 6.2 years ago by • 0
0
votes
1
reply
574
views
Alien GO result from GOstats
gostats
6.2 years ago Yue Zhao • 0
0
votes
3
replies
833
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Genes corresponding to GO terms for unsupported organsims
gostats unsupported organisms
updated 6.3 years ago by ★ 7.2k • written 6.3 years ago by ▴ 270
1
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10
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1.2k
views
Filtering genes for GOstats
gostats
6.4 years ago • updated 6.3 years ago nonCodingGene ▴ 10
0
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1
reply
1.0k
views
Customized GO enrichment with GOstat
GOstats
updated 6.4 years ago by 57k • written 6.4 years ago by • 0
0
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6
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1.2k
views
hyperGTest interpretation of 'under' and finding all Entrez associated with a GO term
Annotation GO gostats
updated 6.5 years ago by 43k • written 8.6 years ago by ▴ 70
0
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2
replies
1.1k
views
Incomplete gene IDs in KEGG pathway testing
gostats kegg
updated 6.6 years ago by 57k • written 6.6 years ago by • 0
3
votes
3
replies
1.4k
views
GOstats "count" question
gostats
updated 6.6 years ago by 57k • written 6.7 years ago by ▴ 10
4
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3
replies
1.8k
views
Select the annotation level during GO enrichment
topgo gostats go
updated 6.7 years ago by 57k • written 6.7 years ago by ▴ 80
0
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0
replies
1.6k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
6.8 years ago Luo Weijun ★ 1.5k
0
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0
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1.1k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
6.8 years ago Guest User ★ 12k
0
votes
2
replies
733
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 7.0 years ago by 57k • written 7.0 years ago by ★ 12k
0
votes
5
replies
828
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 7.2 years ago by 57k • written 7.2 years ago by ★ 12k
0
votes
3
replies
1.9k
views
GOStats: summary hyperGTest, count and size
Annotation GO Organism GOstats Annotation GO Organism GOstats
7.3 years ago Christine Gläßer ▴ 60
0
votes
4
replies
1.9k
views
Identifying Processes as Upregulated or Downregulated
PROcess GOstats PROcess GOstats
updated 7.4 years ago by 57k • written 7.4 years ago by ▴ 100
50 results • Page 1 of 1
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Comment: Rsamtools: how to output base positions on reads by Martin Morgan 25k
Can you add to your question to provide a more complete example of the output that you are after? Have you explored the `pileup()` command?
Comment: IHW and correlated covariates by Michael Love 33k
hi Nikos, I have a new problem that would benefit IHW with two ordinal covariates, do you have any thoughts on approaching this while pres…
Comment: Determining number of genes in each module based on color in WGCNA package by schum266 • 0
For anyone who might be interested. I was able to figure this out. It's very easy.... just set numericLabels = FALSE. (*sigh*) ``` net = …
Comment: Research fellow in immunology by ATpoint ▴ 640
Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater. By the…
Answer: Creating the correct model to account for paired-samples (patient-effect) help n by Gordon Smyth 43k
In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.
Votes
A: How can I find the location of a gene based on cytogenetic bands (e.g. 7q31.2)?
How can I find the location of a gene based on cytogenetic bands (e.g. 7q31.2)?
A: using duplicateCorrelation with limma+voom for RNA-seq data
A: using duplicateCorrelation with limma+voom for RNA-seq data
Comment: What is the correct use of removeBatchEffect's design parameter
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