Search
1
vote
0
answers
43
views
0
answers
News: complete set of OrgDb packages have been added to AnnotationHub
orgdb annotationhub news bioconductor written 15 days ago by shepherl ♦♦ 280
2
votes
0
answers
52
views
0
answers
News: ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news bioconductor ensembl89 written 18 days ago by shepherl ♦♦ 280
0
votes
0
answers
89
views
0
answers
News: ensembl 87 and 88 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news bioconductor written 6 weeks ago by shepherl ♦♦ 280
2
votes
2
answers
121
views
2
answers
R getting "stuck" with RoadMap resource retrieval through AnnotationHub
annotationhub roadmap project written 7 weeks ago by vanesa_1230 • 0
8
votes
0
answers
1.3k
views
6 follow
0
answers
Tutorial: Epigenomics RoadMap Project files now accessible via AnnotationHub
annotationhub nih epigenomics bigdata roadmap project tutorial written 2.1 years ago by Sonali Arora • 360 • updated 7 weeks ago by vanesa_1230 • 0
2
votes
2
answers
154
views
2
answers
AnnotationHub-cant extract database
annotationhub written 10 weeks ago by ecpierce • 0 • updated 10 weeks ago by Valerie Obenchain ♦♦ 6.1k
1
vote
0
answers
124
views
0
answers
annotation of SV (Structural Variants)
variantannotation annotationhub written 12 weeks ago by Bogdan • 460
0
votes
2
answers
202
views
2
answers
Easy way to turn OrgDb object from AnnotationHub into package?
annotationdbi annotationforge pathview annotationhub written 4 months ago by Jenny Drnevich • 1.8k • updated 4 months ago by Valerie Obenchain ♦♦ 6.1k
1
vote
2
answers
199
views
2
answers
mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rtracklayer
annotationhub written 5 months ago by mviterson • 10 • updated 5 months ago by Valerie Obenchain ♦♦ 6.1k
1
vote
1
answer
187
views
1
answer
Problem with AnnotationHub()
annotationhub written 5 months ago by rex.burger • 10 • updated 5 months ago by Valerie Obenchain ♦♦ 6.1k
0
votes
2
answers
142
views
2
answers
"quiet" mode for AnnotationHub?
annotationhub written 5 months ago by Robert K. Bradley • 40
5
votes
4
answers
222
views
4
answers
Certificate problem with ExperimentHub / AnnotationHub
annotationhub software error experimenthub curatedmetagenomicdata written 6 months ago by morganx • 10 • updated 6 months ago by Levi Waldron • 310
5
votes
1
answer
159
views
1
answer
AnnotationHub: two broad peaks from same url are not the same
annotationhub bugs bed encode written 6 months ago by wcstcyx • 30
0
votes
1
answer
209
views
1
answer
bad restore file magic number with AnnotationHub
annotationhub written 7 months ago by jason.serviss • 0 • updated 6 months ago by Valerie Obenchain ♦♦ 6.1k
0
votes
1
answer
206
views
1
answer
Additions to AnnotationHub (for example, CpG islands for hg38 and mm10)
annotationhub written 7 months ago by rcavalca • 30 • updated 7 months ago by Valerie Obenchain ♦♦ 6.1k
3
votes
1
answer
232
views
1
answer
AnnotationHub: A RPKM data.frame of Epigenomics RoadMap Project seems strange
annotationhub rpkm roadmap project data.frame written 8 months ago by wcstcyx • 30
0
votes
1
answer
205
views
1
answer
error with downloading AnnotationHub item AH134
annotationhub written 8 months ago by Robert K. Bradley • 40 • updated 8 months ago by Valerie Obenchain ♦♦ 6.1k
1
vote
1
answer
174
views
1
answer
Why No Uniprot information for some other organisms in AnnotationHub?
annotationhub hub written 9 months ago by wssdandan2009 • 0 • updated 9 months ago by Valerie Obenchain ♦♦ 6.1k
0
votes
1
answer
241
views
1
answer
AnnotationHub's NCBI OrgDB have older EGSOURCEDATE than org.Xy.eg.db?
annotationhub written 9 months ago by Jenny Drnevich • 1.8k • updated 9 months ago by Valerie Obenchain ♦♦ 6.1k
4
votes
1
answer
256
views
1
answer
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub experimenthub written 10 months ago by Michael Love ♦ 12k • updated 9 months ago by Valerie Obenchain ♦♦ 6.1k
0
votes
1
answer
209
views
1
answer
Error in GOFrame due to NA for unsupported organism (Gene Ontology)
gostats reportingtools annotationhub written 11 months ago by cagenet34 • 10 • updated 11 months ago by James W. MacDonald ♦ 43k
7
votes
3
answers
1.8k
views
3
answers
Error in sqliteSendQuery(conn, statement): error in statement: no such table: c.probes
limma annotationdbi edger annotationhub kegga written 15 months ago by Rinaldo Bertossa • 20 • updated 11 months ago by cagenet34 • 10
0
votes
1
answer
223
views
1
answer
Generating database with non model species to be use by ReportingTools
annotationdbi reportingtools annotationhub ensembldb written 12 months ago by cagenet34 • 10 • updated 12 months ago by Johannes Rainer • 840
0
votes
1
answer
254
views
1
answer
Broken AnnotationHub resource (AH21414 | grasp2)
annotationhub grasp2 grasp2db written 13 months ago by Peter Hickey • 230 • updated 13 months ago by Valerie Obenchain ♦♦ 6.1k
4
votes
2
answers
543
views
2
answers
Error installing AnnotationHub on Fedora
annotationhub curl httr fedora written 21 months ago by barashe • 10 • updated 13 months ago by anastazie.d • 10
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