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1
vote
1
answer
31
views
1
answer
AnnotationHub, force update snapshot date?
annotationhub written 12 hours ago by Vang Le • 70 • updated 11 hours ago by shepherl ♦♦ 640
5
votes
0
answers
118
views
0
answers
Eliminating repetitive calls to ExperimentHub
annotationhub experimenthub large dataset written 8 weeks ago by slinker • 20
0
votes
1
answer
77
views
1
answer
initialization of AnnotationHub() in version 2.12.0 is problematically verbose
annotationhub written 9 weeks ago by Robert K. Bradley • 40 • updated 9 weeks ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
92
views
0
answers
News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news ensembl gtf 2bit written 12 weeks ago by shepherl ♦♦ 640
1
vote
0
answers
389
views
0
answers
News: ensembl 91 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news ensembl gtf 2bit written 6 months ago by shepherl ♦♦ 640
0
votes
1
answer
241
views
1
answer
News: OrgDbs in AnnotationHub
orgdb annotationhub news written 8 months ago by shepherl ♦♦ 640
0
votes
0
answers
199
views
0
answers
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
annotation orgdb annotationhub news bioconductor txdb written 8 months ago by shepherl ♦♦ 640
0
votes
1
answer
178
views
1
answer
Trouble loading Roadmap data from AnnotationHub
annotationhub written 9 months ago by bletteb18 • 0 • updated 8 months ago by shepherl ♦♦ 640
1
vote
0
answers
217
views
0
answers
Error: failed to load resource reason: invalid class GRanges object: seqnames(x) contains missing values for newer GRCh38 annotations
annotationhub written 9 months ago by marcel.schilling • 10
0
votes
2
answers
175
views
2
answers
AnnotationHub downloading dataset fail
annotationhub download_error written 10 months ago by vitay.dora • 0 • updated 10 months ago by James W. MacDonald ♦ 46k
4
votes
1
answer
309
views
1
answer
Suggestion: spinning wheel for AnnotationHub
annotationhub written 11 months ago by Michael Love ♦ 18k • updated 10 months ago by shepherl ♦♦ 640
0
votes
1
answer
297
views
1
answer
querying annotation hub for common TF, in common cell line returns no results....
annotate annotationhub written 10 months ago by chrisclarkson100 • 30 • updated 10 months ago by shepherl ♦♦ 640
1
vote
0
answers
446
views
0
answers
News: ensembl 90 ensembldb EnsDb databases have been added to AnnotationHub
annotation annotationhub news ensembl ensemblb written 10 months ago by Johannes Rainer • 1.3k
1
vote
0
answers
384
views
0
answers
News: ensembl 90 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news bioconductor written 10 months ago by shepherl ♦♦ 640 • updated 10 months ago by Martin Morgan ♦♦ 22k
0
votes
0
answers
360
views
0
answers
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub written 11 months ago by slbai01 • 0
0
votes
0
answers
408
views
0
answers
AnnotationHub not working
annotation annotationhub written 11 months ago by genprabir106 • 0 • updated 11 months ago by daniel.vantwisk ♦ 30
1
vote
0
answers
255
views
0
answers
News: complete set of OrgDb packages have been added to AnnotationHub
orgdb annotationhub news bioconductor written 13 months ago by shepherl ♦♦ 640
2
votes
0
answers
277
views
0
answers
News: ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news bioconductor ensembl89 written 13 months ago by shepherl ♦♦ 640
0
votes
0
answers
296
views
0
answers
News: ensembl 87 and 88 gtfs and fasta twobits have been added to AnnotationHub
annotationhub news bioconductor written 14 months ago by shepherl ♦♦ 640
2
votes
2
answers
319
views
2
answers
R getting "stuck" with RoadMap resource retrieval through AnnotationHub
annotationhub roadmap project written 14 months ago by vanesa_1230 • 0
8
votes
0
answers
2.1k
views
6 follow
0
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Tutorial: Epigenomics RoadMap Project files now accessible via AnnotationHub
annotationhub nih epigenomics bigdata roadmap project tutorial written 3.1 years ago by Sonali Arora • 370 • updated 14 months ago by vanesa_1230 • 0
2
votes
2
answers
394
views
2
answers
AnnotationHub-cant extract database
annotationhub written 15 months ago by ecpierce • 0 • updated 15 months ago by Valerie Obenchain ♦♦ 6.5k
1
vote
0
answers
538
views
0
answers
annotation of SV (Structural Variants)
variantannotation annotationhub written 15 months ago by Bogdan • 490
0
votes
2
answers
592
views
2
answers
Easy way to turn OrgDb object from AnnotationHub into package?
annotationdbi annotationforge pathview annotationhub written 17 months ago by Jenny Drnevich • 1.9k • updated 17 months ago by Valerie Obenchain ♦♦ 6.5k
1
vote
2
answers
421
views
2
answers
mismatch between AnnotationHub ensembl v71 hsapiens and direct download using rtracklayer
annotationhub written 18 months ago by mviterson • 10 • updated 18 months ago by Valerie Obenchain ♦♦ 6.5k
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