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Answer: cameraPR() non directional test
by
Hugo Varet
▴ 80
Dear Gordon, thank you for your answer, that's exactly what I wanted to know. Happy to see you'll make it available in the next version o…
Answer: DEseq2 design for additive treatment
by
ATpoint
★ 4.7k
See https://support.bioconductor.org/p/69104/#69197, https://support.bioconductor.org/p/129755/ for testing against an average. Many other …
Comment: Use of limma R package with targeted proteomics for DE analysis
by
svlachavas
▴ 840
Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…
Answer: cameraPR() non directional test
by
Gordon Smyth
52k
Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …
Answer: WGCNA with paired samples
by
Ivo
• 0
You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …
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Answer: DEseq2 design for additive treatment
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
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