0
votes
1
answer
82
views
1
answer
3
votes
1
answer
150
views
1
answer
Differential analysis of multiple samples with different time points
diffbind R atac-seq written 8 weeks ago by firas0 • updated 7 weeks ago by Rory Stark2.6k
2
votes
2
answers
197
views
2
answers
5
votes
1
answer
610
views
1
answer
Filtering for ATAC-seq
edger cqn atac-seq written 7 months ago by shankasal0 • updated 7 months ago by Aaron Lun21k
0
votes
2
answers
366
views
2
answers
ATACseqQC memory overflow issue
software error atac-seq atacseqqc written 10 months ago by José Luis Lavín10 • updated 9 months ago by Haibo.Liu0
4
votes
1
answer
294
views
1
answer
DESeq2 design and stats question
deseq deseq2 differential binding analysis atac-seq written 10 months ago by rbronste60 • updated 10 months ago by Michael Love20k
0
votes
0
answers
265
views
0
answers
4
votes
2
answers
317
views
2
answers
0
votes
0
answers
292
views
0
answers
0
votes
1
answer
387
views
1
answer
Warnings when update DiffBind and running errors
diffbind dba.count atac-seq written 12 months ago by zhaolin200420080 • updated 12 months ago by Rory Stark2.6k
0
votes
1
answer
1.6k
views
1
answer
Calling differential peaks from ATAC-seq data using DEseq2
deseq2 atac-seq written 12 months ago by zhongjixx0 • updated 12 months ago by Rory Stark2.6k
4
votes
1
answer
753
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 12 months ago by j.bergenstrahle80 • updated 12 months ago by Wei Shi2.9k
1
vote
1
answer
385
views
1
answer
DiffBind error with dba.count after update
diffbind chromatin read counting warning message atac-seq written 13 months ago by tgjohnst0 • updated 13 months ago by Gord Brown580
3
votes
2
answers
416
views
2
answers
Error When using dba.count() in DiffBind
diffbind dba.count atac-seq written 13 months ago by ew1520 • updated 13 months ago by Gord Brown580
0
votes
1
answer
200
views
1
answer
Error with dba.count function code
diffbind dba.count atac-seq written 13 months ago by VCLRAC0010 • updated 13 months ago by Gord Brown580
0
votes
1
answer
409
views
1
answer
Homer getDiffExpression.pl issue
atac-seq homer written 17 months ago by niu.shengyong0 • updated 16 months ago by Maciej Jończyk0
0
votes
1
answer
502
views
1
answer
DiffBind: failed to run dba.count in SSH
atac-seq ssh written 19 months ago by zhaolin200420080 • updated 19 months ago by Gord Brown580
1
vote
2
answers
1.0k
views
2
answers
DiffBind R package issue
diffbind atac-seq written 19 months ago by niu.shengyong0 • updated 19 months ago by Rory Stark2.6k
0
votes
2
answers
717
views
2
answers
1
vote
0
answers
491
views
0
answers
1
vote
2
answers
745
views
2
answers
loading dba.plotVolcano in DiffBind
chipseq diffbind atac-seq rory stark written 20 months ago by andrew.gehrke0 • updated 20 months ago by Rory Stark2.6k
0
votes
0
answers
390
views
0
answers
2
votes
2
answers
3.8k
views
2
answers
DiffBind for ATAC-seq
diffbind peak finding macs atac-seq macs2 written 2.3 years ago by igor20 • updated 21 months ago by YaGalbi20
3
votes
1
answer
902
views
1
answer
How to normalize chromatin and RNA-Seq data together ?
sva deseq2 combat atac atac-seq written 21 months ago by g.atla0 • updated 21 months ago by Michael Love20k
1
vote
0
answers
849
views
0
answers
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