0
votes
0
answers
58
views
0
answers
0
votes
0
answers
60
views
0
answers
2
votes
1
answer
206
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 4 months ago by orzechowska.mag10 • updated 3 months ago by Charles Plessy30
1
vote
1
answer
285
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 8 months ago by bernt.popp0 • updated 8 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
264
views
1
answer
Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 8 months ago by bernt.popp0 • updated 8 months ago by Robert Ivanek350
3
votes
1
answer
277
views
1
answer
4
votes
1
answer
250
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 10 months ago by gtho12330 • updated 9 months ago by helmuth0
0
votes
0
answers
270
views
0
answers
3
votes
1
answer
439
views
1
answer
Rsubread featureCounts with strand information
rnaseq rsubread bam written 11 months ago by rubi70 • updated 10 months ago by Aaron Lun17k
3
votes
1
answer
319
views
1
answer
Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 15 months ago by Mehmet Ilyas Cosacak0 • updated 15 months ago by Martin Morgan ♦♦ 20k
8
votes
2
answers
283
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 16 months ago by rubi70 • updated 16 months ago by Gordon Smyth32k
1
vote
1
answer
274
views
1
answer
CopywriteR can't finish calculating copy number
bam copywriter written 17 months ago by thestaroceanster0 • updated 17 months ago by t.kuilman100
2
votes
2
answers
365
views
2
answers
2
votes
1
answer
620
views
1
answer
3
votes
2
answers
513
views
2
answers
about VCF and BAM files
bam snv written 19 months ago by Bogdan470
0
votes
1
answer
387
views
1
answer
Reading BAM file for RapidR
bam rapidr written 20 months ago by Sushant Pawar0 • updated 20 months ago by Aaron Lun17k
0
votes
1
answer
437
views
1
answer
diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 21 months ago by ilyco0 • updated 21 months ago by Aaron Lun17k
3
votes
1
answer
475
views
1
answer
Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 23 months ago by K40 • updated 23 months ago by Martin Morgan ♦♦ 20k
1
vote
5
answers
414
views
5
answers
0
votes
0
answers
575
views
0
answers
0
votes
1
answer
641
views
1
answer
0
votes
1
answer
501
views
1
answer
2
votes
1
answer
416
views
1
answer
0
votes
3
answers
1.5k
views
3
answers
SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 2.4 years ago by Lillyhchen10 • updated 2.4 years ago by Jake50
5
votes
2
answers
866
views
2
answers
Reading alignments above a mapq threshold from BAM files
rsamtools bam written 2.4 years ago by Johannes Rainer1.0k • updated 2.4 years ago by Martin Morgan ♦♦ 20k
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