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Showing: bamreset
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Plotting coverage from bam files
bam plot written 9 months ago by gv40 • updated 9 months ago by James W. MacDonald49k
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269
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Rsamtools insert size
rsamtools bam samtools bowtie2 written 12 months ago by igor20
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494
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CAGEr BAM files size issue
biostrings cager software error R bam written 19 months ago by orzechowska.mag10 • updated 18 months ago by Charles Plessy90
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487
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 23 months ago by bernt.popp0 • updated 23 months ago by Martin Morgan ♦♦ 23k
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637
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Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 23 months ago by bernt.popp0 • updated 23 months ago by Robert Ivanek590
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540
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4
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.1 years ago by gtho12340 • updated 2.1 years ago by helmuth0
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4
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Rsubread featureCounts with strand information
rnaseq rsubread bam written 2.2 years ago by rubi90 • updated 2.2 years ago by Aaron Lun22k
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Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 2.6 years ago by Mehmet Ilyas Cosacak0 • updated 2.5 years ago by Martin Morgan ♦♦ 23k
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Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 2.6 years ago by rubi90 • updated 2.6 years ago by Gordon Smyth36k
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428
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CopywriteR can't finish calculating copy number
bam copywriter written 2.7 years ago by thestaroceanster0 • updated 2.7 years ago by t.kuilman140
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3
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949
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about VCF and BAM files
bam snv written 2.8 years ago by Bogdan550
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595
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Reading BAM file for RapidR
bam rapidr written 2.9 years ago by Sushant Pawar0 • updated 2.9 years ago by Aaron Lun22k
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700
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.0 years ago by ilyco0 • updated 3.0 years ago by Aaron Lun22k
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697
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Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.2 years ago by K50 • updated 3.2 years ago by Martin Morgan ♦♦ 23k
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 3.3 years ago by mhills10
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814
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