0
votes
1
answer
70
views
1
answer
Plotting coverage from bam files
bam plot written 11 weeks ago by gv30 • updated 11 weeks ago by James W. MacDonald46k
0
votes
0
answers
170
views
0
answers
Rsamtools insert size
rsamtools bam samtools bowtie2 written 5 months ago by igor20
0
votes
0
answers
144
views
0
answers
0
votes
0
answers
138
views
0
answers
2
votes
1
answer
339
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 12 months ago by orzechowska.mag10 • updated 11 months ago by Charles Plessy30
1
vote
1
answer
402
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 16 months ago by bernt.popp0 • updated 16 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
435
views
1
answer
Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 16 months ago by bernt.popp0 • updated 16 months ago by Robert Ivanek530
3
votes
1
answer
379
views
1
answer
4
votes
1
answer
427
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 18 months ago by gtho12340 • updated 17 months ago by helmuth0
0
votes
0
answers
403
views
0
answers
3
votes
1
answer
905
views
1
answer
Rsubread featureCounts with strand information
rnaseq rsubread bam written 19 months ago by rubi90 • updated 18 months ago by Aaron Lun20k
3
votes
1
answer
425
views
1
answer
Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 23 months ago by Mehmet Ilyas Cosacak0 • updated 23 months ago by Martin Morgan ♦♦ 22k
8
votes
2
answers
382
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 24 months ago by rubi90 • updated 24 months ago by Gordon Smyth34k
1
vote
1
answer
345
views
1
answer
CopywriteR can't finish calculating copy number
bam copywriter written 2.1 years ago by thestaroceanster0 • updated 2.1 years ago by t.kuilman140
2
votes
2
answers
524
views
2
answers
2
votes
1
answer
1.0k
views
1
answer
3
votes
2
answers
748
views
2
answers
about VCF and BAM files
bam snv written 2.2 years ago by Bogdan490
0
votes
1
answer
504
views
1
answer
Reading BAM file for RapidR
bam rapidr written 2.3 years ago by Sushant Pawar0 • updated 2.3 years ago by Aaron Lun20k
0
votes
1
answer
559
views
1
answer
diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 2.4 years ago by ilyco0 • updated 2.4 years ago by Aaron Lun20k
3
votes
1
answer
592
views
1
answer
Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 2.6 years ago by K50 • updated 2.6 years ago by Martin Morgan ♦♦ 22k
1
vote
5
answers
574
views
5
answers
0
votes
0
answers
778
views
0
answers
0
votes
1
answer
793
views
1
answer
0
votes
1
answer
696
views
1
answer
2
votes
1
answer
524
views
1
answer
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