0
votes
1
answer
38
views
1
answer
0
votes
1
answer
103
views
1
answer
Plotting coverage from bam files
bam plot written 5 months ago by gv40 • updated 5 months ago by James W. MacDonald48k
0
votes
0
answers
208
views
0
answers
Rsamtools insert size
rsamtools bam samtools bowtie2 written 8 months ago by igor20
0
votes
0
answers
172
views
0
answers
0
votes
0
answers
171
views
0
answers
2
votes
1
answer
405
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 15 months ago by orzechowska.mag10 • updated 14 months ago by Charles Plessy90
1
vote
1
answer
428
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 19 months ago by bernt.popp0 • updated 19 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
518
views
1
answer
Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 19 months ago by bernt.popp0 • updated 19 months ago by Robert Ivanek530
3
votes
1
answer
435
views
1
answer
4
votes
1
answer
508
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 21 months ago by gtho12340 • updated 20 months ago by helmuth0
0
votes
0
answers
468
views
0
answers
4
votes
1
answer
1.1k
views
1
answer
Rsubread featureCounts with strand information
rnaseq rsubread bam written 22 months ago by rubi90 • updated 21 months ago by Aaron Lun21k
3
votes
1
answer
457
views
1
answer
Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 2.2 years ago by Mehmet Ilyas Cosacak0 • updated 2.2 years ago by Martin Morgan ♦♦ 22k
8
votes
2
answers
416
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 2.2 years ago by rubi90 • updated 2.2 years ago by Gordon Smyth35k
1
vote
1
answer
376
views
1
answer
CopywriteR can't finish calculating copy number
bam copywriter written 2.4 years ago by thestaroceanster0 • updated 2.4 years ago by t.kuilman140
2
votes
2
answers
576
views
2
answers
2
votes
1
answer
1.2k
views
1
answer
3
votes
2
answers
822
views
2
answers
about VCF and BAM files
bam snv written 2.5 years ago by Bogdan520
0
votes
1
answer
540
views
1
answer
Reading BAM file for RapidR
bam rapidr written 2.6 years ago by Sushant Pawar0 • updated 2.6 years ago by Aaron Lun21k
0
votes
1
answer
608
views
1
answer
diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 2.7 years ago by ilyco0 • updated 2.7 years ago by Aaron Lun21k
3
votes
1
answer
630
views
1
answer
Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 2.8 years ago by K50 • updated 2.8 years ago by Martin Morgan ♦♦ 22k
1
vote
5
answers
635
views
5
answers
0
votes
0
answers
820
views
0
answers
0
votes
1
answer
895
views
1
answer
0
votes
1
answer
753
views
1
answer
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