0
votes
0
answers
123
views
0
answers
Rsamtools insert size
rsamtools bam samtools bowtie2 written 10 weeks ago by igor20
0
votes
0
answers
108
views
0
answers
0
votes
0
answers
110
views
0
answers
2
votes
1
answer
285
views
1
answer
CAGEr BAM files size issue
biostrings cager software error R bam written 9 months ago by orzechowska.mag10 • updated 8 months ago by Charles Plessy30
1
vote
1
answer
359
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 13 months ago by bernt.popp0 • updated 13 months ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
374
views
1
answer
Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 13 months ago by bernt.popp0 • updated 13 months ago by Robert Ivanek500
3
votes
1
answer
334
views
1
answer
4
votes
1
answer
358
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 15 months ago by gtho12340 • updated 15 months ago by helmuth0
0
votes
0
answers
367
views
0
answers
3
votes
1
answer
745
views
1
answer
Rsubread featureCounts with strand information
rnaseq rsubread bam written 16 months ago by rubi90 • updated 15 months ago by Aaron Lun19k
3
votes
1
answer
386
views
1
answer
Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 20 months ago by Mehmet Ilyas Cosacak0 • updated 20 months ago by Martin Morgan ♦♦ 21k
8
votes
2
answers
348
views
2
answers
Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 21 months ago by rubi90 • updated 21 months ago by Gordon Smyth33k
1
vote
1
answer
323
views
1
answer
CopywriteR can't finish calculating copy number
bam copywriter written 22 months ago by thestaroceanster0 • updated 22 months ago by t.kuilman130
2
votes
2
answers
460
views
2
answers
2
votes
1
answer
839
views
1
answer
3
votes
2
answers
640
views
2
answers
about VCF and BAM files
bam snv written 2.0 years ago by Bogdan480
0
votes
1
answer
461
views
1
answer
Reading BAM file for RapidR
bam rapidr written 2.1 years ago by Sushant Pawar0 • updated 2.1 years ago by Aaron Lun19k
0
votes
1
answer
514
views
1
answer
diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 2.2 years ago by ilyco0 • updated 2.2 years ago by Aaron Lun19k
3
votes
1
answer
546
views
1
answer
Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 2.3 years ago by K40 • updated 2.3 years ago by Martin Morgan ♦♦ 21k
1
vote
5
answers
530
views
5
answers
0
votes
0
answers
704
views
0
answers
0
votes
1
answer
752
views
1
answer
0
votes
1
answer
619
views
1
answer
2
votes
1
answer
485
views
1
answer
0
votes
3
answers
2.0k
views
3
answers
SummarizeOverlaps in R
bam summarizeoverlaps rstudio written 2.8 years ago by Lillyhchen10 • updated 2.8 years ago by Jake60
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