Showing: bamreset
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Consensus sequence from BAM file
bam consensus written 5 weeks ago by O. William McClung0 • updated 22 days ago by Hervé Pagès ♦♦ 14k
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129
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How to query a base along an aligned read by genomic position?
genomicalignments bam cigar written 5 weeks ago by Shian Su20 • updated 4 weeks ago by Janet Young740
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GUIDEseq bam input
bam guideseq written 3 months ago by tomas.rodriguez0 • updated 3 months ago by Julie Zhu4.1k
7
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Convert BAM to FASTQ
bam fastq written 8 months ago by ioannis.vardaxis30 • updated 8 months ago by Martin Morgan ♦♦ 24k
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303
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Speed and memory of custom function using scanBam
rsamtools bam scanbamparam written 14 months ago by António Miguel de Jesus Domingues470 • updated 14 months ago by Martin Morgan ♦♦ 24k
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Plotting coverage from bam files
bam plot written 19 months ago by gv40 • updated 19 months ago by James W. MacDonald52k
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Rsamtools insert size
rsamtools bam samtools bowtie2 written 22 months ago by igor30
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340
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2
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CAGEr BAM files size issue
biostrings cager software error R bam written 2.4 years ago by orzechowska.mag10 • updated 2.3 years ago by Charles Plessy110
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.7 years ago by bernt.popp0 • updated 2.7 years ago by Martin Morgan ♦♦ 24k
1
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784
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Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 2.7 years ago by bernt.popp0 • updated 2.7 years ago by Robert Ivanek660
3
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679
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4
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721
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.9 years ago by gtho12340 • updated 2.9 years ago by helmuth0
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782
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0
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4
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2.0k
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Rsubread featureCounts with strand information
rnaseq rsubread bam written 3.0 years ago by rubi90 • updated 2.9 years ago by Aaron Lun25k
3
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1
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600
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1
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Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 3.3 years ago by Mehmet Ilyas Cosacak0 • updated 3.3 years ago by Martin Morgan ♦♦ 24k
8
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631
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Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 3.4 years ago by rubi90 • updated 3.4 years ago by Gordon Smyth39k
1
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508
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CopywriteR can't finish calculating copy number
bam copywriter written 3.5 years ago by thestaroceanster0 • updated 3.5 years ago by t.kuilman140
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1.8k
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3
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1.1k
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about VCF and BAM files
bam snv written 3.6 years ago by Bogdan580
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700
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Reading BAM file for RapidR
bam rapidr written 3.7 years ago by Sushant Pawar0 • updated 3.7 years ago by Aaron Lun25k
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827
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.8 years ago by ilyco0 • updated 3.8 years ago by Aaron Lun25k
3
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804
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Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 4.0 years ago by K50 • updated 4.0 years ago by Martin Morgan ♦♦ 24k
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