Showing: bamreset
7
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1
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94
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Convert BAM to FASTQ
bam fastq written 22 days ago by ioannis.vardaxis30 • updated 22 days ago by Martin Morgan ♦♦ 23k
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1
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187
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0
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1
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252
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Plotting coverage from bam files
bam plot written 11 months ago by gv40 • updated 11 months ago by James W. MacDonald49k
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299
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Rsamtools insert size
rsamtools bam samtools bowtie2 written 14 months ago by igor20
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238
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0
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254
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0
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2
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1
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522
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CAGEr BAM files size issue
biostrings cager software error R bam written 21 months ago by orzechowska.mag10 • updated 20 months ago by Charles Plessy90
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513
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1
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.1 years ago by bernt.popp0 • updated 2.1 years ago by Martin Morgan ♦♦ 23k
1
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1
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662
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1
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Gviz sashimi read count
gviz bam read counting sashimi plots sashimi written 2.1 years ago by bernt.popp0 • updated 2.1 years ago by Robert Ivanek590
3
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1
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574
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1
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4
votes
1
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610
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.3 years ago by gtho12340 • updated 2.2 years ago by helmuth0
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0
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632
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0
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4
votes
1
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1.5k
views
1
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Rsubread featureCounts with strand information
rnaseq rsubread bam written 2.3 years ago by rubi90 • updated 2.3 years ago by Aaron Lun23k
3
votes
1
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528
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1
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Plotting only intergenic reads on chromosomes?
genomegraphs rsamtools gviz bam samtools written 2.7 years ago by Mehmet Ilyas Cosacak0 • updated 2.7 years ago by Martin Morgan ♦♦ 23k
8
votes
2
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519
views
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Counting ambiguously mapped reads per feature
rnaseq genomicranges rsamtools genomicalignments bam written 2.7 years ago by rubi90 • updated 2.7 years ago by Gordon Smyth37k
1
vote
1
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445
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1
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CopywriteR can't finish calculating copy number
bam copywriter written 2.9 years ago by thestaroceanster0 • updated 2.9 years ago by t.kuilman140
2
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2
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675
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2
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2
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1
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1.5k
views
1
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3
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2
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988
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2
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about VCF and BAM files
bam snv written 3.0 years ago by Bogdan550
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1
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622
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1
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Reading BAM file for RapidR
bam rapidr written 3.1 years ago by Sushant Pawar0 • updated 3.1 years ago by Aaron Lun23k
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1
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726
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1
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diffHic preparePairs() does not identify paired-end reads
bam paired diffhic preparepairs written 3.2 years ago by ilyco0 • updated 3.2 years ago by Aaron Lun23k
3
votes
1
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722
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1
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Read in specific rows of a BAM file that match a certain RNAME
bam scanbamparam written 3.3 years ago by K50 • updated 3.3 years ago by Martin Morgan ♦♦ 23k
1
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5
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5
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0
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0
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953
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0
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1
vote
1
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1.1k
views
1
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Rsamtools memory leak
iranges rsamtools granges bam scanbam written 3.5 years ago by mhills10
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