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Answer: DESeq2, tximport normalization, normalization factors, size factors by Michael Love 32k
1) "counts(dds,normalized=TRUE)" returns counts that are corrected for library size and transcript length. Yes, and the indication is th…
Comment: DiffBind dba.report() output: Is "concentration" normalized? by Rory Stark ♦ 3.6k
As I understand it, you have two contrasts that share one group of samples. You expect the concentrations reported for the shared group to …
Comment: Removing rows (countData) from a DESeq Object by Bine • 0
Thank you I will check this documentation!
Comment: Removing rows (countData) from a DESeq Object by ATpoint • 470
> View(dds0) doesnt work Yes, that is expected. The DESeqDataSet is a container, not a specific assay itself so you first have to access t…
Comment: Removing rows (countData) from a DESeq Object by Bine • 0
Thank you very much. Sry for not explaining it clearly enough. It is great that the colData will be filtered automatically. What I want to…
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