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Comment: Create multiple DoparParams with different number of registered cores
by
ATpoint
★ 4.2k
https://github.com/Bioconductor/BiocParallel/blob/devel/R/DoparParam-class.R DoparParam is a BiocParallel class, that is why I am asking …
Answer: Combining two bulk RNA seq datasets
by
W. Evan Johnson
▴ 850
Hello, I would recommend you use BatchQC (bioconductor package) to evaluate the extent to which batch effects impact your data. Not all bat…
Comment: Create multiple DoparParams with different number of registered cores
by
James W. MacDonald
66k
`registerDoParallel` and `DoparParam` are both `doParallel` functions, which again, is a CRAN package. What part of the code you present ab…
Answer: Create multiple DoparParams with different number of registered cores
by
Martin Morgan
25k
I think the answer is "you can't". `DoparParam()` provides a 'wrapper' around doParallel functionality, e.g., `bpworkers(DoparParam())` rea…
Comment: Create multiple DoparParams with different number of registered cores
by
ATpoint
★ 4.2k
This does not answer my question. I am not aiming to register different types of backends, but the same backend with different configuratio…
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A: goana limma- extract list of DE genes and genes in the enriched GO terms?
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
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