Showing: countsreset
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tximport, Kallisto and Deseq2 (quick answer)
deseq2 counts tximport kallisto written 7 months ago by Mozart10 • updated 7 months ago by Michael Love26k
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Using DiffBind with only a counts table?
diffbind counts atac differential analysis atacseq written 9 months ago by pgontarz10 • updated 8 months ago by Rory Stark3.0k
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Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 12 months ago by chiara.facciotto0 • updated 8 months ago by Ahmed Alhendi0
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Results table completely wrong for specified contrast of
deseq2 counts logfoldchange written 10 months ago by A40 • updated 10 months ago by Michael Love26k
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Count filter for differential expression
limma edger counts written 12 months ago by kaur0 • updated 12 months ago by Gordon Smyth39k
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Handling pseudogenes in RNA-seq
counts star rna-seq pseudogenes written 18 months ago by supremerulersuraj0 • updated 18 months ago by Levi Waldron980
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Deseq2: padj value changes with varying alpha
rnaseq deseq2 counts written 2.1 years ago by yoursbassanio0 • updated 2.1 years ago by Michael Love26k
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DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 2.2 years ago by herrmannmaria940 • updated 2.2 years ago by Michael Love26k
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Help: extract counts from RNA-seq .bam/.bai files
edger counts written 2.6 years ago by mat14940 • updated 2.6 years ago by Aaron Lun25k
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Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 2.6 years ago by jol.espinoz20 • updated 2.6 years ago by James W. MacDonald52k
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IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 2.8 years ago by Assa Yeroslaviz1.4k • updated 2.8 years ago by Hervé Pagès ♦♦ 14k
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small RNAs quantification
smallrna counts written 3.2 years ago by ribioinfo90
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DESeq2 Input format
deseq2 counts written 3.2 years ago by uzer0 • updated 3.2 years ago by Michael Love26k
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