0
votes
2
answers
125
views
2
answers
Handling pseudogenes in RNA-seq
counts star rna-seq pseudogenes written 9 weeks ago by supremerulersuraj0 • updated 9 weeks ago by Levi Waldron600
2
votes
1
answer
117
views
1
answer
1
vote
0
answers
143
views
0
answers
2
votes
1
answer
219
views
1
answer
Deseq2: padj value changes with varying alpha
rnaseq deseq2 counts written 10 months ago by yoursbassanio0 • updated 10 months ago by Michael Love19k
0
votes
1
answer
256
views
1
answer
0
votes
2
answers
265
views
2
answers
DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 11 months ago by herrmannmaria940 • updated 11 months ago by Michael Love19k
0
votes
0
answers
228
views
0
answers
4
votes
2
answers
406
views
2
answers
Help: extract counts from RNA-seq .bam/.bai files
edger counts written 15 months ago by mat14920 • updated 15 months ago by Aaron Lun20k
6
votes
1
answer
718
views
1
answer
Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 16 months ago by jol.espinoz10 • updated 16 months ago by James W. MacDonald47k
0
votes
1
answer
454
views
1
answer
IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 18 months ago by Assa Yeroslaviz1.4k • updated 18 months ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
325
views
2
answers
small RNAs quantification
smallrna counts written 23 months ago by riccardo50
2
votes
1
answer
679
views
1
answer
DESeq2 Input format
deseq2 counts written 23 months ago by uzer0 • updated 23 months ago by Michael Love19k
1
vote
1
answer
490
views
1
answer
2
votes
1
answer
452
views
1
answer
1
vote
1
answer
360
views
1
answer
2
votes
1
answer
482
views
1
answer
3
votes
1
answer
365
views
1
answer
window counts in csaw
counts csaw written 2.3 years ago by nobishvarghese0 • updated 2.3 years ago by Aaron Lun20k
3
votes
1
answer
1.6k
views
1
answer
1
vote
1
answer
1.7k
views
1
answer
How do I extract read counts from DESeq2
deseq2 counts covariates written 2.5 years ago by hechtp0 • updated 2.5 years ago by Michael Love19k
1
vote
2
answers
1.2k
views
2
answers
2
votes
2
answers
1.1k
views
2
answers
2
votes
1
answer
1.2k
views
1
answer
Limma/DESeq2: Statistic and readcount of biological replicates
normalization limma deseq2 counts written 2.6 years ago by Radek40 • updated 2.6 years ago by Aaron Lun20k
1
vote
1
answer
674
views
1
answer
deseq2 normalized data
regression deseq2 counts written 2.9 years ago by akp0 • updated 2.9 years ago by Michael Love19k
0
votes
1
answer
2.0k
views
1
answer
Not full rank design using Deseq2
deseq2 counts design written 3.5 years ago by Varshna20 • updated 3.5 years ago by Michael Love19k
0
votes
0
answers
582
views
0
answers
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