2
votes
1
answer
113
views
1
answer
Deseq2: padj value changes with varying alpha
rnaseq deseq2 counts written 4 months ago by yoursbassanio0 • updated 4 months ago by Michael Love16k
0
votes
1
answer
134
views
1
answer
0
votes
2
answers
188
views
2
answers
DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 5 months ago by herrmannmaria940 • updated 5 months ago by Michael Love16k
0
votes
0
answers
164
views
0
answers
4
votes
2
answers
271
views
2
answers
Help: extract counts from RNA-seq .bam/.bai files
edger counts written 9 months ago by mat14920 • updated 9 months ago by Aaron Lun18k
6
votes
1
answer
461
views
1
answer
Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 10 months ago by jol.espinoz10 • updated 10 months ago by James W. MacDonald45k
0
votes
1
answer
317
views
1
answer
IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 12 months ago by Assa Yeroslaviz1.3k • updated 12 months ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
278
views
2
answers
small RNAs quantification
smallrna counts written 17 months ago by riccardo40
2
votes
1
answer
468
views
1
answer
DESeq2 Input format
deseq2 counts written 17 months ago by uzer0 • updated 17 months ago by Michael Love16k
1
vote
1
answer
390
views
1
answer
2
votes
1
answer
383
views
1
answer
1
vote
1
answer
319
views
1
answer
2
votes
1
answer
371
views
1
answer
3
votes
1
answer
312
views
1
answer
window counts in csaw
counts csaw written 21 months ago by nobishvarghese0 • updated 21 months ago by Aaron Lun18k
3
votes
1
answer
849
views
1
answer
1
vote
1
answer
1.1k
views
1
answer
How do I extract read counts from DESeq2
deseq2 counts covariates written 24 months ago by hechtp0 • updated 24 months ago by Michael Love16k
1
vote
2
answers
899
views
2
answers
2
votes
2
answers
967
views
2
answers
1
vote
1
answer
961
views
1
answer
Limma/DESeq2: Statistic and readcount of biological replicates
normalization limma deseq2 counts written 2.1 years ago by Radek40 • updated 2.1 years ago by Aaron Lun18k
1
vote
1
answer
545
views
1
answer
deseq2 normalized data
regression deseq2 counts written 2.4 years ago by akp0 • updated 2.4 years ago by Michael Love16k
0
votes
1
answer
1.5k
views
1
answer
Not full rank design using Deseq2
deseq2 counts design written 3.0 years ago by Varshna20 • updated 3.0 years ago by Michael Love16k
0
votes
0
answers
497
views
0
answers
3
votes
2
answers
3.4k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 3.3 years ago by Peter Crisp10 • updated 3.3 years ago by Steve Lianoglou12k
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