2
votes
1
answer
108
views
1
answer
1
vote
1
answer
82
views
1
answer
0
votes
2
answers
152
views
2
answers
Handling pseudogenes in RNA-seq
counts star rna-seq pseudogenes written 4 months ago by supremerulersuraj0 • updated 4 months ago by Levi Waldron730
2
votes
1
answer
164
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1
answer
1
vote
0
answers
161
views
0
answers
2
votes
1
answer
271
views
1
answer
Deseq2: padj value changes with varying alpha
rnaseq deseq2 counts written 12 months ago by yoursbassanio0 • updated 12 months ago by Michael Love19k
0
votes
1
answer
315
views
1
answer
0
votes
2
answers
311
views
2
answers
DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 13 months ago by herrmannmaria940 • updated 13 months ago by Michael Love19k
0
votes
0
answers
251
views
0
answers
4
votes
2
answers
469
views
2
answers
Help: extract counts from RNA-seq .bam/.bai files
edger counts written 17 months ago by mat14920 • updated 17 months ago by Aaron Lun21k
6
votes
1
answer
860
views
1
answer
Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 18 months ago by jol.espinoz20 • updated 18 months ago by James W. MacDonald48k
0
votes
1
answer
498
views
1
answer
IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 20 months ago by Assa Yeroslaviz1.4k • updated 20 months ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
346
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2
answers
small RNAs quantification
smallrna counts written 2.1 years ago by riccardo50
2
votes
1
answer
754
views
1
answer
DESeq2 Input format
deseq2 counts written 2.1 years ago by uzer0 • updated 2.1 years ago by Michael Love19k
1
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1
answer
515
views
1
answer
2
votes
1
answer
485
views
1
answer
1
vote
1
answer
389
views
1
answer
2
votes
1
answer
505
views
1
answer
3
votes
1
answer
384
views
1
answer
window counts in csaw
counts csaw written 2.4 years ago by nobishvarghese0 • updated 2.4 years ago by Aaron Lun21k
3
votes
1
answer
1.9k
views
1
answer
1
vote
1
answer
2.0k
views
1
answer
How do I extract read counts from DESeq2
deseq2 counts covariates written 2.6 years ago by hechtp0 • updated 2.6 years ago by Michael Love19k
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2
answers
1.3k
views
2
answers
2
votes
2
answers
1.1k
views
2
answers
2
votes
1
answer
1.3k
views
1
answer
Limma/DESeq2: Statistic and readcount of biological replicates
normalization limma deseq2 counts written 2.8 years ago by Radek40 • updated 2.8 years ago by Aaron Lun21k
1
vote
1
answer
726
views
1
answer
deseq2 normalized data
regression deseq2 counts written 3.1 years ago by akp0 • updated 3.1 years ago by Michael Love19k
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