1
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1
answer
67
views
1
answer
1
vote
0
answers
107
views
0
answers
2
votes
1
answer
160
views
1
answer
Deseq2: padj value changes with varying alpha
rnaseq deseq2 counts written 7 months ago by yoursbassanio0 • updated 7 months ago by Michael Love17k
0
votes
1
answer
192
views
1
answer
0
votes
2
answers
228
views
2
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DESeq2 ComputeSumFactors extract normalized counts
normalization deseq2 counts written 8 months ago by herrmannmaria940 • updated 8 months ago by Michael Love17k
0
votes
0
answers
199
views
0
answers
4
votes
2
answers
327
views
2
answers
Help: extract counts from RNA-seq .bam/.bai files
edger counts written 12 months ago by mat14920 • updated 12 months ago by Aaron Lun19k
6
votes
1
answer
572
views
1
answer
Can edgeR TMM normalization be used for other count data?
normalization edger counts tmm written 13 months ago by jol.espinoz10 • updated 13 months ago by James W. MacDonald46k
0
votes
1
answer
384
views
1
answer
IRanges object from count matrix
rnaseq iranges genomicranges featurecounts counts written 15 months ago by Assa Yeroslaviz1.4k • updated 15 months ago by Hervé Pagès ♦♦ 13k
0
votes
2
answers
303
views
2
answers
small RNAs quantification
smallrna counts written 20 months ago by riccardo40
2
votes
1
answer
573
views
1
answer
DESeq2 Input format
deseq2 counts written 20 months ago by uzer0 • updated 20 months ago by Michael Love17k
1
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1
answer
440
views
1
answer
2
votes
1
answer
417
views
1
answer
1
vote
1
answer
341
views
1
answer
2
votes
1
answer
437
views
1
answer
3
votes
1
answer
342
views
1
answer
window counts in csaw
counts csaw written 2.0 years ago by nobishvarghese0 • updated 2.0 years ago by Aaron Lun19k
3
votes
1
answer
1.2k
views
1
answer
1
vote
1
answer
1.4k
views
1
answer
How do I extract read counts from DESeq2
deseq2 counts covariates written 2.2 years ago by hechtp0 • updated 2.2 years ago by Michael Love17k
1
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2
answers
1.1k
views
2
answers
2
votes
2
answers
1.0k
views
2
answers
2
votes
1
answer
1.1k
views
1
answer
Limma/DESeq2: Statistic and readcount of biological replicates
normalization limma deseq2 counts written 2.4 years ago by Radek40 • updated 2.4 years ago by Aaron Lun19k
1
vote
1
answer
615
views
1
answer
deseq2 normalized data
regression deseq2 counts written 2.7 years ago by akp0 • updated 2.7 years ago by Michael Love17k
0
votes
1
answer
1.8k
views
1
answer
Not full rank design using Deseq2
deseq2 counts design written 3.3 years ago by Varshna20 • updated 3.3 years ago by Michael Love17k
0
votes
0
answers
550
views
0
answers
3
votes
2
answers
3.7k
views
2
answers
limma voom accessing normalised counts tables
geneexpression rnaseq limma voom counts written 3.6 years ago by Peter Crisp10 • updated 3.6 years ago by Steve Lianoglou12k
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