0
votes
1
answer
76
views
1
answer
coverage QC file mean duplication and "mom" columns
coverage purecn written 11 weeks ago by twtoal0 • updated 11 weeks ago by markus.riester90
3
votes
1
answer
208
views
1
answer
0
votes
0
answers
151
views
0
answers
0
votes
1
answer
216
views
1
answer
0
votes
1
answer
554
views
1
answer
Plot per-base-coverage output of a bed file of whole genome
coverage bed written 11 months ago by sgupt460 • updated 11 months ago by James W. MacDonald46k
2
votes
1
answer
600
views
5 follow
1
answer
GOseq: count bias correction variations?
coverage goseq written 4.0 years ago by Christopher Conley40 • updated 15 months ago by Gordon Smyth34k
0
votes
0
answers
280
views
0
answers
1
vote
1
answer
402
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 16 months ago by bernt.popp0 • updated 16 months ago by Martin Morgan ♦♦ 22k
4
votes
1
answer
428
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 18 months ago by gtho12340 • updated 18 months ago by helmuth0
0
votes
1
answer
367
views
1
answer
Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 24 months ago by ccanchaya0 • updated 24 months ago by Hervé Pagès ♦♦ 13k
0
votes
0
answers
379
views
0
answers
RNA-Seq metagene coverage
coverage written 2.0 years ago by Jake60
0
votes
1
answer
496
views
1
answer
Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 2.0 years ago by Christian Ruckert170 • updated 2.0 years ago by Michael Lawrence10k
5
votes
2
answers
315
views
2
answers
2
votes
1
answer
465
views
1
answer
Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 2.2 years ago by bastien.chevreux0 • updated 2.2 years ago by Ryan C. Thompson6.8k
0
votes
1
answer
510
views
1
answer
How to set a negative coverage to ZERO
coverage genomicranges written 2.3 years ago by vanhzh0 • updated 2.3 years ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
449
views
1
answer
6
votes
0
answers
833
views
5 follow
0
answers
0
votes
2
answers
1.1k
views
2
answers
BH vs BY in p.adjust + FDR interpretation
coverage limma written 12.0 years ago by lemerle@embl.de50 • updated 2.5 years ago by Gordon Smyth34k
0
votes
1
answer
1.8k
views
1
answer
1
vote
1
answer
902
views
1
answer
Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 3.0 years ago by Jake60 • updated 3.0 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
797
views
2
answers
2
votes
1
answer
475
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 3.3 years ago by Anya10 • updated 3.3 years ago by Hervé Pagès ♦♦ 13k
2
votes
1
answer
1.1k
views
1
answer
Shrink or Expand RLE
coverage iranges granges rle written 3.3 years ago by gen30 • updated 3.3 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
934
views
2
answers
Error using Bsmooth.tstat due to NAs
coverage bsseq written 3.9 years ago by Guest User12k • updated 3.4 years ago by parker0
0
votes
0
answers
618
views
0
answers
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