0
votes
1
answer
408
views
1
answer
Plot per-base-coverage output of a bed file of whole genome
coverage bed written 6 weeks ago by sgupt460 • updated 6 weeks ago by James W. MacDonald44k
2
votes
1
answer
440
views
5 follow
1
answer
GOseq: count bias correction variations?
coverage goseq written 3.2 years ago by Christopher Conley40 • updated 5 months ago by Gordon Smyth31k
0
votes
0
answers
155
views
0
answers
1
vote
1
answer
247
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 6 months ago by bernt.popp0 • updated 6 months ago by Martin Morgan ♦♦ 20k
4
votes
1
answer
217
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 8 months ago by gtho12320 • updated 8 months ago by helmuth0
0
votes
1
answer
219
views
1
answer
Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 14 months ago by ccanchaya0 • updated 14 months ago by Hervé Pagès ♦♦ 12k
0
votes
0
answers
246
views
0
answers
RNA-Seq metagene coverage
coverage written 14 months ago by Jake50
0
votes
1
answer
312
views
1
answer
Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 14 months ago by Christian Ruckert170 • updated 14 months ago by Michael Lawrence9.5k
5
votes
2
answers
232
views
2
answers
2
votes
1
answer
348
views
1
answer
Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 17 months ago by bastien.chevreux0 • updated 17 months ago by Ryan C. Thompson5.9k
0
votes
1
answer
341
views
1
answer
How to set a negative coverage to ZERO
coverage genomicranges written 18 months ago by vanhzh0 • updated 18 months ago by Martin Morgan ♦♦ 20k
1
vote
1
answer
323
views
1
answer
6
votes
0
answers
572
views
5 follow
0
answers
0
votes
2
answers
831
views
2
answers
BH vs BY in p.adjust + FDR interpretation
coverage limma written 11.2 years ago by lemerle@embl.de50 • updated 20 months ago by Gordon Smyth31k
0
votes
1
answer
1.3k
views
1
answer
1
vote
1
answer
694
views
1
answer
Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 2.2 years ago by Jake50 • updated 2.2 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
627
views
2
answers
2
votes
1
answer
394
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 2.4 years ago by Anya10 • updated 2.4 years ago by Hervé Pagès ♦♦ 12k
2
votes
1
answer
816
views
1
answer
Shrink or Expand RLE
coverage iranges granges rle written 2.5 years ago by gen30 • updated 2.5 years ago by Martin Morgan ♦♦ 20k
0
votes
2
answers
771
views
2
answers
Error using Bsmooth.tstat due to NAs
coverage bsseq written 3.0 years ago by Guest User12k • updated 2.5 years ago by parker0
0
votes
0
answers
522
views
0
answers
1
vote
1
answer
974
views
1
answer
"Normalising" GRanges coverage object
coverage go gviz written 3.1 years ago by Aliaksei Holik350 • updated 3.1 years ago by Ryan C. Thompson5.9k
0
votes
0
answers
451
views
0
answers
0
votes
0
answers
788
views
0
answers
0
votes
1
answer
1.2k
views
1
answer
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