3
votes
1
answer
103
views
1
answer
0
votes
0
answers
89
views
0
answers
0
votes
1
answer
151
views
1
answer
0
votes
1
answer
480
views
1
answer
Plot per-base-coverage output of a bed file of whole genome
coverage bed written 6 months ago by sgupt460 • updated 6 months ago by James W. MacDonald45k
2
votes
1
answer
523
views
5 follow
1
answer
GOseq: count bias correction variations?
coverage goseq written 3.6 years ago by Christopher Conley40 • updated 10 months ago by Gordon Smyth32k
0
votes
0
answers
219
views
0
answers
1
vote
1
answer
328
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 11 months ago by bernt.popp0 • updated 11 months ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
320
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 13 months ago by gtho12340 • updated 13 months ago by helmuth0
0
votes
1
answer
297
views
1
answer
Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 19 months ago by ccanchaya0 • updated 19 months ago by Hervé Pagès ♦♦ 13k
0
votes
0
answers
313
views
0
answers
RNA-Seq metagene coverage
coverage written 19 months ago by Jake60
0
votes
1
answer
406
views
1
answer
Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 20 months ago by Christian Ruckert170 • updated 20 months ago by Michael Lawrence9.9k
5
votes
2
answers
286
views
2
answers
2
votes
1
answer
405
views
1
answer
Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 22 months ago by bastien.chevreux0 • updated 22 months ago by Ryan C. Thompson6.3k
0
votes
1
answer
433
views
1
answer
How to set a negative coverage to ZERO
coverage genomicranges written 23 months ago by vanhzh0 • updated 23 months ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
395
views
1
answer
6
votes
0
answers
716
views
5 follow
0
answers
0
votes
2
answers
960
views
2
answers
BH vs BY in p.adjust + FDR interpretation
coverage limma written 11.6 years ago by lemerle@embl.de50 • updated 2.1 years ago by Gordon Smyth32k
0
votes
1
answer
1.6k
views
1
answer
1
vote
1
answer
799
views
1
answer
Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 2.6 years ago by Jake60 • updated 2.6 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
720
views
2
answers
2
votes
1
answer
441
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 2.9 years ago by Anya10 • updated 2.9 years ago by Hervé Pagès ♦♦ 13k
2
votes
1
answer
950
views
1
answer
Shrink or Expand RLE
coverage iranges granges rle written 2.9 years ago by gen30 • updated 2.9 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
871
views
2
answers
Error using Bsmooth.tstat due to NAs
coverage bsseq written 3.5 years ago by Guest User12k • updated 3.0 years ago by parker0
0
votes
0
answers
581
views
0
answers
1
vote
1
answer
1.1k
views
1
answer
"Normalising" GRanges coverage object
coverage go gviz written 3.6 years ago by Aliaksei Holik350 • updated 3.6 years ago by Ryan C. Thompson6.3k
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