Showing: coveragereset
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coverage QC file mean duplication and "mom" columns
coverage purecn written 15 months ago by twtoal0 • updated 15 months ago by markus.riester110
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Plot per-base-coverage output of a bed file of whole genome
coverage bed written 2.0 years ago by sgupt460 • updated 2.0 years ago by James W. MacDonald50k
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GOseq: count bias correction variations?
coverage goseq written 5.1 years ago by Christopher Conley40 • updated 2.3 years ago by Gordon Smyth38k
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Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 2.4 years ago by bernt.popp0 • updated 2.4 years ago by Martin Morgan ♦♦ 23k
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bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 2.6 years ago by gtho12340 • updated 2.6 years ago by helmuth0
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539
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Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 3.1 years ago by ccanchaya0 • updated 3.1 years ago by Hervé Pagès ♦♦ 14k
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RNA-Seq metagene coverage
coverage written 3.1 years ago by Jake60
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782
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Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 3.1 years ago by Christian Ruckert170 • updated 3.1 years ago by Michael Lawrence11k
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644
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Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 3.3 years ago by bastien.chevreux0 • updated 3.3 years ago by Ryan C. Thompson7.3k
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660
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How to set a negative coverage to ZERO
coverage genomicranges written 3.4 years ago by vanhzh0 • updated 3.4 years ago by Martin Morgan ♦♦ 23k
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BH vs BY in p.adjust + FDR interpretation
coverage limma written 13.1 years ago by lemerle@embl.de50 • updated 3.6 years ago by Gordon Smyth38k
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Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 4.1 years ago by Jake60 • updated 4.1 years ago by Martin Morgan ♦♦ 23k
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5
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Calling coverage on GRanges object yields small negative values
coverage granges written 4.3 years ago by Anya10 • updated 4.3 years ago by Hervé Pagès ♦♦ 14k
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Shrink or Expand RLE
coverage iranges granges rle written 4.4 years ago by gen30 • updated 4.4 years ago by Martin Morgan ♦♦ 23k
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Error using Bsmooth.tstat due to NAs
coverage bsseq written 4.9 years ago by Guest User12k • updated 4.4 years ago by parker0
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