2
votes
1
answer
334
views
5 follow
1
answer
GOseq: count bias correction variations?
coverage goseq written 2.7 years ago by Christopher Conley40 • updated 10 days ago by Gordon Smyth30k
0
votes
0
answers
70
views
0
answers
1
vote
1
answer
128
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 5 weeks ago by bernt.popp0 • updated 5 weeks ago by Martin Morgan ♦♦ 19k
4
votes
1
answer
137
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 3 months ago by gtho12320 • updated 3 months ago by helmuth0
0
votes
1
answer
149
views
1
answer
Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 9 months ago by ccanchaya0 • updated 9 months ago by Hervé Pagès ♦♦ 12k
0
votes
0
answers
145
views
0
answers
RNA-Seq metagene coverage
coverage written 9 months ago by Jake50
0
votes
1
answer
184
views
1
answer
Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 9 months ago by Christian Ruckert170 • updated 9 months ago by Michael Lawrence9.1k
5
votes
2
answers
178
views
2
answers
2
votes
1
answer
254
views
1
answer
Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 12 months ago by bastien.chevreux0 • updated 12 months ago by Ryan C. Thompson5.6k
0
votes
1
answer
256
views
1
answer
How to set a negative coverage to ZERO
coverage genomicranges written 13 months ago by vanhzh0 • updated 13 months ago by Martin Morgan ♦♦ 19k
1
vote
1
answer
243
views
1
answer
6
votes
0
answers
446
views
5 follow
0
answers
0
votes
2
answers
712
views
2
answers
BH vs BY in p.adjust + FDR interpretation
coverage limma written 10.8 years ago by lemerle@embl.de50 • updated 15 months ago by Gordon Smyth30k
0
votes
1
answer
1.1k
views
1
answer
1
vote
1
answer
577
views
1
answer
Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 21 months ago by Jake50 • updated 21 months ago by Martin Morgan ♦♦ 19k
0
votes
2
answers
521
views
2
answers
2
votes
1
answer
316
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 2.0 years ago by Anya10 • updated 2.0 years ago by Hervé Pagès ♦♦ 12k
2
votes
1
answer
673
views
1
answer
Shrink or Expand RLE
coverage iranges granges rle written 2.1 years ago by gen30 • updated 2.1 years ago by Martin Morgan ♦♦ 19k
0
votes
2
answers
656
views
2
answers
Error using Bsmooth.tstat due to NAs
coverage bsseq written 2.6 years ago by Guest User12k • updated 2.1 years ago by parker0
0
votes
0
answers
447
views
0
answers
1
vote
1
answer
803
views
1
answer
"Normalising" GRanges coverage object
coverage go gviz written 2.7 years ago by Aliaksei Holik350 • updated 2.7 years ago by Ryan C. Thompson5.6k
0
votes
0
answers
357
views
0
answers
0
votes
0
answers
667
views
0
answers
0
votes
1
answer
981
views
1
answer
0
votes
2
answers
496
views
2
answers
mr.edgeR tests in MEDIPS package
coverage medips written 3.0 years ago by Vining, Kelly10 • updated 2.9 years ago by Matthias Lienhard90
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