3
votes
1
answer
152
views
1
answer
0
votes
0
answers
115
views
0
answers
0
votes
1
answer
171
views
1
answer
0
votes
1
answer
506
views
1
answer
Plot per-base-coverage output of a bed file of whole genome
coverage bed written 8 months ago by sgupt460 • updated 8 months ago by James W. MacDonald46k
2
votes
1
answer
551
views
5 follow
1
answer
GOseq: count bias correction variations?
coverage goseq written 3.7 years ago by Christopher Conley40 • updated 12 months ago by Gordon Smyth33k
0
votes
0
answers
243
views
0
answers
1
vote
1
answer
359
views
1
answer
Gviz off-by-one with STAR BAM
coverage gviz bam star off-by-one written 13 months ago by bernt.popp0 • updated 13 months ago by Martin Morgan ♦♦ 21k
4
votes
1
answer
361
views
1
answer
bamsignals - bamcoverage has no strand-specific option??
coverage bam bamsignals written 15 months ago by gtho12340 • updated 15 months ago by helmuth0
0
votes
1
answer
318
views
1
answer
Views with RleLists and IRangesLists
coverage genomicalignments views irangeslist rlelist written 21 months ago by ccanchaya0 • updated 21 months ago by Hervé Pagès ♦♦ 13k
0
votes
0
answers
336
views
0
answers
RNA-Seq metagene coverage
coverage written 21 months ago by Jake60
0
votes
1
answer
431
views
1
answer
Efficient coverage calculation with RleList and GRanges
coverage granges rle view mean written 21 months ago by Christian Ruckert170 • updated 21 months ago by Michael Lawrence10.0k
5
votes
2
answers
295
views
2
answers
2
votes
1
answer
424
views
1
answer
Using edgeR with "traditional" coverage data?
rnaseq coverage edger written 24 months ago by bastien.chevreux0 • updated 24 months ago by Ryan C. Thompson6.5k
0
votes
1
answer
460
views
1
answer
How to set a negative coverage to ZERO
coverage genomicranges written 2.1 years ago by vanhzh0 • updated 2.1 years ago by Martin Morgan ♦♦ 21k
1
vote
1
answer
411
views
1
answer
6
votes
0
answers
759
views
5 follow
0
answers
0
votes
2
answers
997
views
2
answers
BH vs BY in p.adjust + FDR interpretation
coverage limma written 11.7 years ago by lemerle@embl.de50 • updated 2.3 years ago by Gordon Smyth33k
0
votes
1
answer
1.7k
views
1
answer
1
vote
1
answer
844
views
1
answer
Does coverage() split exon spanning RNA-seq reads?
coverage genomicranges genomicalignments written 2.8 years ago by Jake60 • updated 2.8 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
747
views
2
answers
2
votes
1
answer
449
views
1
answer
Calling coverage on GRanges object yields small negative values
coverage granges written 3.0 years ago by Anya10 • updated 3.0 years ago by Hervé Pagès ♦♦ 13k
2
votes
1
answer
1.0k
views
1
answer
Shrink or Expand RLE
coverage iranges granges rle written 3.1 years ago by gen30 • updated 3.0 years ago by Martin Morgan ♦♦ 21k
0
votes
2
answers
893
views
2
answers
Error using Bsmooth.tstat due to NAs
coverage bsseq written 3.6 years ago by Guest User12k • updated 3.1 years ago by parker0
0
votes
0
answers
591
views
0
answers
1
vote
1
answer
1.1k
views
1
answer
"Normalising" GRanges coverage object
coverage go gviz written 3.7 years ago by Aliaksei Holik350 • updated 3.7 years ago by Ryan C. Thompson6.5k
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