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54
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RNAseq DESeq2 paired data design help
rnaseq deseq2 design matrix written 7 days ago by umlch • 0
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39
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DESEQ2 design with multiple conditions
deseq2 design matrix written 2 days ago by vrehaman • 0 • updated 2 days ago by Michael Love ♦ 17k
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63
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1
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DESeq account for using two different siRNA constructs to knockdown same gene
deseq2 design and contrast matrix multiple factor design design matrix written 13 days ago by khhsource • 0 • updated 13 days ago by Michael Love ♦ 17k
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93
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2
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EdgeR model formula design matrix
edger design matrix paired samples written 22 days ago by aiko • 0 • updated 22 days ago by Aaron Lun • 19k
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84
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differential expression analysis of cell subtypes mixture
edger deseq2 design matrix multifactorial design written 5 weeks ago by Assa Yeroslaviz • 1.4k • updated 5 weeks ago by Aaron Lun • 19k
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101
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edgeR design matrix
edger design and contrast matrix design matrix written 5 weeks ago by cafelumiere12 • 20 • updated 5 weeks ago by Gordon Smyth ♦ 33k
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99
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1
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Deseq multifactor test design full rank error and how to determine one variable only effect.
deseq2 multiple factor design design matrix written 7 weeks ago by jaime.alvarez.benayas • 0
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2
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266
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LIMMA : group specific effect of a treatment while controlling for individual effect
limma limma design matrix design matrix limma-voom limma time-course written 7 weeks ago by SPbeginner • 0
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2
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205
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Microarray expression analysis for on factor taking account confounders (covariables)
limma design matrix matrix with covariables written 9 weeks ago by michel655 • 0 • updated 8 weeks ago by Aaron Lun • 19k
3
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1
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263
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1
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DESeq2 batch effect with and without interaction model
deseq2 R linear model rna-seq design matrix written 5 months ago by gdagstn • 0 • updated 5 months ago by Michael Love ♦ 17k
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2
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502
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stimulation effects between wild-type and knockout cells using deseq
deseq2 interactions multiple factor design design matrix written 2.4 years ago by Assa Yeroslaviz • 1.4k • updated 5 months ago by Michael Love ♦ 17k
2
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1
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199
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1
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complex design for chip-seq analysis
chipseq limma multiple factor design design matrix csaw written 6 months ago by Assa Yeroslaviz • 1.4k • updated 6 months ago by Aaron Lun • 19k
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288
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deseq2 correcting for batch effects
deseq2 removebatcheffect() batch effect design matrix written 6 months ago by Assa Yeroslaviz • 1.4k • updated 6 months ago by Michael Love ♦ 17k
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401
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DESeq2 design matrix with a single mock and multiple timepoints
deseq2 design matrix written 8 months ago by ap3637 • 0 • updated 8 months ago by Michael Love ♦ 17k
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1
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164
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1
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Time-course analysis with limma for >3 time points
timecourse limma design matrix multiple time points contrast matrix written 10 months ago by relathman • 0 • updated 10 months ago by James W. MacDonald ♦ 46k
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177
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Test for differential variability with missMethyl (DiffVar) using block design
limma block design matrix missmethyl diffvar written 10 months ago by Simone • 170
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282
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Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarray data
microarray limma batch effect design matrix confounding written 11 months ago by svlachavas • 570
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353
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DESeq2: how to identify confounding variable in the design matrix
rnaseq deseq2 design matrix confounders written 12 months ago by lina.faller • 0
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3
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552
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3
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multiple comparison using limma
limma design matrix multiple comparisons makecontrasts written 14 months ago by annabelle.congras • 0
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2
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441
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2
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Which is the best design matrix to compare a timecourse between two conditions?
timecourse limma voom design matrix written 14 months ago by Camila Orellana • 10 • updated 14 months ago by Gordon Smyth ♦ 33k
2
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1
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620
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RNA-seq paired analysis design
limma edger deseq2 design matrix paired samples written 15 months ago by cjmb3 • 0 • updated 15 months ago by Gordon Smyth ♦ 33k
0
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1
answer
404
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1
answer
Design question limma multi variables
limma design matrix written 15 months ago by Stane • 40 • updated 15 months ago by Aaron Lun • 19k
2
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1
answer
425
views
1
answer
DESeq2 multifactorial design with unpaired individuals
deseq2 design matrix written 15 months ago by fanli.gcb • 0 • updated 15 months ago by Michael Love ♦ 17k
1
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1
answer
407
views
1
answer
design for edgeR
edger design matrix glmlrt written 16 months ago by simarsidhu25 • 0 • updated 16 months ago by Aaron Lun • 19k
1
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2
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280
views
2
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EdgeR multiple factor design question
edger design matrix written 16 months ago by bioinformatics • 10
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