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0
votes
2
answers
236
views
2
answers
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate illuminahumanmethylationepicanno.ilm10b2.hg19 written 10 months ago by mia • 0 • updated 10 months ago by Yuan Tian • 80
1
vote
1
answer
246
views
1
answer
DMRcate results file ordered by genomic location and not Stouffer p-val?
methylation dmrcate written 10 months ago by Ellen O • 0 • updated 10 months ago by Tim Peters • 70
1
vote
1
answer
250
views
1
answer
coef in dmrcate
bumphunter methylation dmrcate epic written 12 months ago by yoursbassanio • 0 • updated 12 months ago by James W. MacDonald ♦ 46k
0
votes
3
answers
528
views
3
answers
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
minfi dmrcate written 12 months ago by Jenny Drnevich • 1.9k • updated 12 months ago by Tim Peters • 70
0
votes
3
answers
475
views
3
answers
minfi, lumi, methylumi, DMRcate installation error
lumi methylumi minfi illuminahumanmethylation450kanno.ilmn12.hg19 dmrcate written 13 months ago by poojitha.stemcell • 0 • updated 13 months ago by Tim Peters • 70
0
votes
1
answer
326
views
1
answer
DMRcate: Scaling factor for bandwidth
dmr analysis dmrcate dmr written 14 months ago by alexandria.andrayas • 0 • updated 14 months ago by Tim Peters • 70
0
votes
1
answer
331
views
1
answer
DMRcate DMR.plot Turn Off Group Means
visualization dmrcate written 15 months ago by csugai • 0 • updated 15 months ago by Tim Peters • 70
1
vote
1
answer
248
views
1
answer
DMRcate error in extractCoords function
software error dmrcate extractranges written 15 months ago by Xavier Pastor • 10 • updated 15 months ago by Tim Peters • 70
0
votes
1
answer
213
views
1
answer
Betacutoff is not used in dmrcate function.
dmrcate written 15 months ago by icobo • 0 • updated 15 months ago by Tim Peters • 70
0
votes
6
answers
5.0k
views
6
answers
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate written 17 months ago by ew17 • 0 • updated 15 months ago by Tim Peters • 70
1
vote
2
answers
384
views
2
answers
DMRcate results meanpvals
dmrcate written 22 months ago by Giovanni Calice • 150 • updated 21 months ago by Tim Peters • 70
0
votes
1
answer
237
views
1
answer
conflicts in chromosome number
dmrcate written 22 months ago by yuping.zhang • 0 • updated 22 months ago by Tim Peters • 70
2
votes
2
answers
459
views
2
answers
DMRcate results cg ID of significant DMR
dmrcate written 22 months ago by Giovanni Calice • 150 • updated 22 months ago by Tim Peters • 70
2
votes
1
answer
528
views
1
answer
DMRcate error: object 'annotated' not found
error dmrcate written 2.3 years ago by Eric Smith • 0 • updated 2.3 years ago by Tim Peters • 70
0
votes
2
answers
675
views
2
answers
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate written 2.4 years ago by par.larsson • 0
2
votes
1
answer
651
views
1
answer
DMRcate cpg.annotate error
design matrix dmrcate written 2.4 years ago by Giovanni Calice • 150 • updated 2.4 years ago by Tim Peters • 70
1
vote
1
answer
483
views
1
answer
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate written 2.7 years ago by irini.liampa • 0 • updated 2.7 years ago by andrew.j.skelton73 • 310
0
votes
1
answer
1.1k
views
1
answer
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation dmrcate written 3.0 years ago by Brian Smith • 110 • updated 3.0 years ago by Tim Peters • 70
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