1
vote
1
reply
56
views
DMRcate extractRanges error
DMRcate
1 day ago macsue.jacques • 10 • updated 1 day ago shepherl 2.5k
0
votes
0
replies
62
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3 months ago Mike • 10
3
votes
4
replies
120
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
5 months ago Jeni • 0 • updated 5 months ago Tim Peters • 120
0
votes
2
replies
82
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
7 months ago zh9118 • 0
0
votes
5
replies
158
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
7 months ago yoursbassanio • 0 • updated 7 months ago James W. MacDonald 56k
4
votes
4
replies
160
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
8 months ago Jeni • 0 • updated 8 months ago James W. MacDonald 56k
1
vote
8
replies
190
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
9 months ago landenshanie • 40 • updated 9 months ago Tim Peters • 120
2
votes
5
replies
190
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
17 months ago yoursbassanio • 0 • updated 17 months ago James W. MacDonald 56k
0
votes
3
replies
184
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
18 months ago anne-kristin.stavrum • 0 • updated 18 months ago Tim Peters • 120
0
votes
2
replies
237
views
cpg.annotate model requirements
DMRcate ChAMP
19 months ago kadm • 0 • updated 19 months ago Yuan Tian • 220
1
vote
3
replies
212
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
21 months ago yoursbassanio • 0 • updated 21 months ago James W. MacDonald 56k
2
votes
18
replies
2.0k
views
DMRcate results cg ID of significant DMR
dmrcate
4.8 years ago Giovanni Calice • 150 • updated 2.7 years ago 574233829 • 0
0
votes
3
replies
484
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
2.7 years ago 574233829 • 0
2
votes
6
replies
600
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
2.8 years ago Ashlynn • 0 • updated 2.8 years ago Tim Peters • 120
0
votes
3
replies
691
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
3.7 years ago mia • 0 • updated 3.7 years ago Yuan Tian • 90
1
vote
2
replies
692
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
3.8 years ago Ellen O • 0 • updated 3.8 years ago Tim Peters • 120
1
vote
3
replies
734
views
coef in dmrcate
dmrcate bumphunter methylation epic
3.9 years ago yoursbassanio • 0 • updated 3.9 years ago James W. MacDonald 56k
0
votes
9
replies
1.4k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
3.9 years ago Jenny Drnevich ♦ 2.0k • updated 3.9 years ago Tim Peters • 120
0
votes
10
replies
1.3k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
4.0 years ago poojitha.stemcell • 0 • updated 4.0 years ago Tim Peters • 120
0
votes
1
reply
767
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
4.1 years ago alexandria.andrayas • 10 • updated 4.1 years ago Tim Peters • 120
0
votes
2
replies
638
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
4.1 years ago csugai • 0 • updated 4.1 years ago Tim Peters • 120
1
vote
2
replies
484
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
4.1 years ago Xavier Pastor • 10 • updated 4.1 years ago Tim Peters • 120
0
votes
1
reply
422
views
Betacutoff is not used in dmrcate function.
DMRcate
4.1 years ago icobo • 0 • updated 4.1 years ago Tim Peters • 120
0
votes
9
replies
12k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
4.4 years ago ew17 • 0 • updated 4.2 years ago Tim Peters • 120
1
vote
15
replies
902
views
DMRcate results meanpvals
dmrcate
4.7 years ago Giovanni Calice • 150 • updated 4.7 years ago Tim Peters • 120
0
votes
1
reply
443
views
conflicts in chromosome number
DMRcate
4.7 years ago yuping.zhang • 0 • updated 4.7 years ago Tim Peters • 120
2
votes
2
replies
888
views
DMRcate error: object 'annotated' not found
dmrcate error
5.2 years ago Eric Smith • 0 • updated 5.2 years ago Tim Peters • 120
0
votes
5
replies
1.1k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
5.3 years ago • updated 5.2 years ago par.larsson • 0
2
votes
2
replies
1.3k
views
DMRcate cpg.annotate error
dmrcate design matrix
5.3 years ago Giovanni Calice • 150 • updated 5.3 years ago Tim Peters • 120
1
vote
1
reply
773
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
5.6 years ago irini.liampa • 0 • updated 5.6 years ago andrew.j.skelton73 • 340
0
votes
3
replies
1.9k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
5.9 years ago Brian Smith • 120 • updated 5.9 years ago Tim Peters • 120
31 results • Page 1 of 1
Recent ...
Replies
Comment: Same methylation probe ID with different locus annotations in Illumina 27k and 4 by yuabrahamliu • 0
Thank you for the reply Kevin. I further checked the sequences of the probes and found something noteworthy. For the 27k package, the seque…
Comment: problem installing ENmix package by James W. MacDonald 56k
Will you give the full output that you get when installing?
Comment: problem installing ENmix package by lea • 0
I tried both (with the slashes the other way around), it did not work but I delete the package directly on my file browser and it correctly…
Comment: problem installing ENmix package by James W. MacDonald 56k
Ugh. You need to convert the back slashes in the call to `unlink` to forward slashes or R will get all huffy with you.
Comment: problem installing ENmix package by James W. MacDonald 56k
Ah, that explains it. When R installs a package, it first creates a directory in your library dir called 00LOCK and does a preliminary inst…
Votes
Comment: DMRcate extractRanges error
Comment: Does hashedDrops support 'imbalanced' combinations of HTOs?
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
A: Minfi issue: return code from pthread_create() is 22
Answer: DiffBind fragmentSize meaning
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