0
votes
1
answer
74
views
1
answer
Count filter for differential expression
limma edger counts written 1 day ago by kaur0 • updated 8 hours ago by Gordon Smyth35k
1
vote
1
answer
40
views
1
answer
edgeR. Known cancer genes are not differentially expressed?
edger tcga written 3 days ago by rina0 • updated 2 days ago by Aaron Lun21k
1
vote
1
answer
57
views
1
answer
edgeR DE analysis: single group combined factors or GLM with interaction term
edger glm written 5 days ago by jspmccain10 • updated 5 days ago by Aaron Lun21k
5
votes
1
answer
932
views
1
answer
non-integer counts for edgeR
edger written 6.6 years ago by Gordon Smyth35k
0
votes
1
answer
57
views
1
answer
Setting up the design for paired analysis
limma edger paired design written 7 days ago by candida.vaz30 • updated 6 days ago by James W. MacDonald48k
2
votes
2
answers
53
views
2
answers
Filtering, minimum sample number, and condition in edgeR
edger filtering written 9 days ago by rproendo0 • updated 9 days ago by Ryan C. Thompson7.0k
3
votes
1
answer
45
views
1
answer
5
votes
2
answers
166
views
2
answers
edgeR paired samples with blocking
limma edger paired samples blocking written 18 days ago by anou0 • updated 14 days ago by Gordon Smyth35k
2
votes
1
answer
61
views
1
answer
1
vote
1
answer
66
views
1
answer
edgeR: boxplot the expression of a gene in two conditions after glmFit
edger written 18 days ago by zoppoli pietro10 • updated 18 days ago by Aaron Lun21k
1
vote
1
answer
98
views
1
answer
EdgeR RNAseq -- best way to deal with random effects
rnaseq edger written 19 days ago by emb130 • updated 19 days ago by Aaron Lun21k
1
vote
1
answer
116
views
1
answer
shRNA-Seq analysis using edgeR
edger experimental design model.matrix shrnaseq written 25 days ago by Assa Yeroslaviz1.4k • updated 25 days ago by Aaron Lun21k
1
vote
1
answer
94
views
1
answer
4
votes
2
answers
86
views
2
answers
0
votes
1
answer
65
views
1
answer
edgeR 2-way ANOVA testing
edger anova written 4 weeks ago by martyna.broda0 • updated 4 weeks ago by Gordon Smyth35k
3
votes
2
answers
111
views
2
answers
Method to get normalized counts in edgeR without cpm
normalization edger written 4 weeks ago by Pauline0 • updated 4 weeks ago by Gordon Smyth35k
0
votes
1
answer
91
views
1
answer
RNAseq gene expression analysis in Personalized genomics
limma edger deseq2 tcga written 5 weeks ago by bioc.vkas0 • updated 4 weeks ago by Michael Love20k
2
votes
2
answers
90
views
2
answers
0
votes
1
answer
106
views
1
answer
2
votes
1
answer
107
views
1
answer
p -values smaller than machine epsilon in edgeR
edger p values written 5 weeks ago by oscarf0 • updated 5 weeks ago by Gordon Smyth35k
3
votes
1
answer
84
views
1
answer
1
vote
1
answer
140
views
1
answer
edgeR package fails to load after install
edger install error written 5 weeks ago by jenny.russ0 • updated 5 weeks ago by Aaron Lun21k
2
votes
1
answer
109
views
1
answer
Predict circadian expression with edgeR
edger circadian rhythms limorhyde written 5 weeks ago by ri.lars40 • updated 5 weeks ago by Aaron Lun21k
2
votes
1
answer
102
views
1
answer
9
votes
2
answers
149
views
5 follow
2
answers
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