Search
2
votes
1
answer
47
views
1
answer
Design Matrix with paired and independent samples plus RUVg Spike-in normalization
edger ruvseq design matrix paired samples written 3 days ago by ChrisM • 0 • updated 3 days ago by James W. MacDonald ♦ 47k
2
votes
2
answers
42
views
2
answers
Change legend names when using plotBCV
edger plot tutorial written 4 days ago by Juan • 0 • updated 3 days ago by Gordon Smyth ♦ 34k
1
vote
2
answers
41
views
2
answers
EdgeR Multivariate Analysis question
limma edger written 5 days ago by joangibert14 • 0 • updated 4 days ago by Gordon Smyth ♦ 34k
0
votes
0
answers
27
views
0
answers
Installation of package 'FDb.InfiniumMethylation.hg19' fails
edger bioconductor fdb.infiniummethylation.hg19 written 5 days ago by m.nabais • 0
0
votes
1
answer
80
views
1
answer
Error in RnaSeqGeneEdgeRQL
edger dgelist rnaseqgeneedgerql written 13 days ago by Kevin • 0 • updated 13 days ago by Gordon Smyth ♦ 34k
0
votes
1
answer
43
views
1
answer
Is there a way to specify the pathway level of classification that we want in kegga function from edgeR?
edger kegg kegga written 15 days ago by bernsmq • 0 • updated 15 days ago by James W. MacDonald ♦ 47k
0
votes
1
answer
59
views
1
answer
time series RNA-seq allowing time offset between individuals
timecourse edger deseq2 rna-seq fittimeseries written 17 days ago by jpsf • 0 • updated 16 days ago by Aaron Lun • 20k
0
votes
1
answer
104
views
1
answer
Batch Effect Correction
edger deseq2 batch effect rld removebatcheffect written 19 days ago by ahnje770 • 0
3
votes
1
answer
88
views
1
answer
Cannot retrieve DE genes from goana GO terms
limma edger goana written 29 days ago by b.nota • 300 • updated 29 days ago by Aaron Lun • 20k
4
votes
1
answer
53
views
1
answer
edgeR coefficients for DEG analysis
edger written 29 days ago by nonCodingGene • 10 • updated 29 days ago by James W. MacDonald ♦ 47k
0
votes
1
answer
64
views
1
answer
weights must be finite positive value
edger estimatedispersions written 4 weeks ago by nonCodingGene • 10 • updated 4 weeks ago by Aaron Lun • 20k
0
votes
0
answers
37
views
0
answers
ProcessAmplicons using very little memory on big job?
edger processamplicons memory problem written 4 weeks ago by sdalin • 0
2
votes
2
answers
111
views
2
answers
Implementation of specific cpm filtering in RNA-Seq data described in a previously published edgeR pipeline
rnaseq edger non-specific filtering cpm written 5 weeks ago by svlachavas • 610 • updated 5 weeks ago by Gordon Smyth ♦ 34k
3
votes
1
answer
166
views
1
answer
EdgeR for differential analysis between two cell lines without replication
rnaseq edger differential gene expression written 5 weeks ago by Biologist • 70 • updated 5 weeks ago by Gordon Smyth ♦ 34k
5
votes
1
answer
160
views
1
answer
Possible ways to select differential expressed genes using DeSeq2 or edgeR
edger deseq2 R differential gene expression fold change written 5 weeks ago by Beginner • 50 • updated 5 weeks ago by Axel Klenk • 920
2
votes
1
answer
72
views
1
answer
Run edgeR or Voom+LIMMA where groups are dynamically reassigned for each gene.
rnaseq limma edger written 5 weeks ago by Ahdee • 40 • updated 5 weeks ago by Gordon Smyth ♦ 34k
4
votes
1
answer
58
views
1
answer
Differential profile for only one normal - tumor pair
edger paired design degs written 6 weeks ago by takumima • 10 • updated 6 weeks ago by Gordon Smyth ♦ 34k
4
votes
1
answer
65
views
1
answer
DE analysis when large portion of transcriptome is changed
edger ebseq differential expression rna-seq written 6 weeks ago by marhabaie • 0 • updated 6 weeks ago by Aaron Lun • 20k
2
votes
1
answer
80
views
1
answer
edgeR: design matrix for methylation analysis
edger methylation written 6 weeks ago by sgld • 0 • updated 6 weeks ago by Gordon Smyth ♦ 34k
1
vote
0
answers
73
views
0
answers
PROBLEM WHILE IMPORTING FOR edgeR
edger differential gene expression written 6 weeks ago by prakashpandey1111 • 0
0
votes
1
answer
82
views
1
answer
Identify the normalized count from differential expression
edger written 6 weeks ago by shuklashweta33 • 0 • updated 6 weeks ago by Gordon Smyth ♦ 34k
2
votes
1
answer
83
views
1
answer
Batch Variation-MDS Plot
edger R batch effect written 7 weeks ago by drskm7 • 0 • updated 6 weeks ago by Gordon Smyth ♦ 34k
0
votes
1
answer
62
views
1
answer
Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edger interactions makecontrasts written 7 weeks ago by David Rengel • 70 • updated 7 weeks ago by Aaron Lun • 20k
0
votes
1
answer
86
views
1
answer
unexpected p-value histogram in edgeR
edger p-value distribution written 7 weeks ago by approximately.random • 0 • updated 7 weeks ago by Ryan C. Thompson ♦ 6.8k
1
vote
1
answer
69
views
1
answer
edgeR: problem with the quasi-likelihood F-test
edger glmqlftest written 7 weeks ago by Estel Kitsune • 0 • updated 7 weeks ago by Aaron Lun • 20k
<prev • 1,315 results • page 1 of 53 • next >
Recent...
Replies
Votes
Awards • All »
Locations • All »
  • United States/New York/The Rockefeller University, 1 hour ago
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 140 users visited in the last hour