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The meaning of interaction terms in design matrix in edgeR User's Guide on page 38
edger written 5 days ago by 2002ymx02 • 0 • updated 5 days ago by Gordon Smyth ♦ 38k
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Sai Nikhith Cholleti
edger deseq2 written 7 days ago by sainikhith508001 • 0 • updated 6 days ago by Michael Love ♦ 24k
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analysis of multiple batches and multiple treatment conditions in scRNA-seq
limma edger deseq2 combat scrnaseq written 19 days ago by Bogdan • 570 • updated 8 days ago by Andrew_McDavid • 190
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Is the colnames of model.matrix on the page 34 in edgeR User's Guide?
edger written 9 days ago by 2002ymx02 • 0 • updated 8 days ago by Gordon Smyth ♦ 38k
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How to create two columns for model matrix used in limma?
limma edger written 9 days ago by Ahdee • 40 • updated 9 days ago by Gordon Smyth ♦ 38k
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the normalization methods of MRN and TMM methods supplied by DESeq2 and edgeR
normalization edger deseq2 written 10 days ago by 15958021290 • 0 • updated 9 days ago by Gordon Smyth ♦ 38k
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RNA-seq normalization without filtering
rnaseq normalization edger deseq2 written 12 days ago by Lin • 40 • updated 12 days ago by Steve Lianoglou ♦ 12k
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how to get normalized count data from edgeR using TMM methods
normalization edger written 12 days ago by 15958021290 • 0
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110
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design matrix for 4 groups in edgeR
edger written 13 days ago by sandraggava • 0 • updated 13 days ago by Gordon Smyth ♦ 38k
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News: Course in Berlin- Genomics with R and Bioconductor - September 16-20
limma edger deseq2 news written 13 days ago by info • 0
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edgeR DGEList and design matrix
edger dge written 15 days ago by ctstackh • 0 • updated 15 days ago by Yunshun Chen • 390
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Most (90%) DE genes of a contrast were upregulated: implication on the assumptions of TMM-normalisation?
normalization limma edger written 16 days ago by mikhael.manurung • 160 • updated 16 days ago by Gordon Smyth ♦ 38k
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EdgeR mistake- dispersion
edger written 19 days ago by trumbia • 0 • updated 18 days ago by Gordon Smyth ♦ 38k
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goana and "No annotated genes found in universe" even with Entrez gene ids
edger goana written 27 days ago by matrs • 0 • updated 27 days ago by Gordon Smyth ♦ 38k
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using limma and edgeR for differential expression of Drop-seq/10xGenomics scRNA-seq data
limma edger scran scater simplesinglecell written 4 weeks ago by Bogdan • 570 • updated 29 days ago by Aaron Lun • 24k
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normalization of RNA-seq data after over-expressing the transcription factors
limma edger deseq2 voom written 4 weeks ago by Bogdan • 570 • updated 29 days ago by Aaron Lun • 24k
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Feedback on edgeR model setup: identifying sex-by-tissue effects
edger written 4 weeks ago by spflanagan.phd • 0 • updated 4 weeks ago by Aaron Lun • 24k
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RNA-Seq normalization for co-expression analysis
limma edger wgcna written 5 weeks ago by Lin • 40 • updated 5 weeks ago by Gordon Smyth ♦ 38k
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EdgeR - Model matrix for complex model similar to user guide 3.5 example - but more complex
limma edger written 5 weeks ago by DonnyB • 0 • updated 5 weeks ago by James W. MacDonald ♦ 50k
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Difference of difference, paired design
limma edger deseq2 written 6 weeks ago by Bloodgas • 0 • updated 5 weeks ago by swbarnes2 • 240
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Creating contrasts which do not include the reference level in limma, edgeR or DESeq2
limma edger deseq2 written 6 weeks ago by Ben • 0 • updated 6 weeks ago by James W. MacDonald ♦ 50k
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adding batch effects as a covariate in additive model in edgeR
edger batch effects written 6 weeks ago by Victoria • 0 • updated 6 weeks ago by James W. MacDonald ♦ 50k
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137
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Complex multifactorial design with random effects in Limma/voom
limma edger written 6 weeks ago by joasmile84 • 10 • updated 6 weeks ago by Aaron Lun • 24k
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Why am I getting many differentially expressed genes that have no symbol or do not map to a chromosome (RNA-seq)
edger written 6 weeks ago by melanie.girard • 0 • updated 6 weeks ago by Gordon Smyth ♦ 38k
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9 follow
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Differential Expression Analysis in edgeR using Anova
edger anova dispersion gene expression written 7 months ago by ilovesuperheroes1993 • 0 • updated 7 weeks ago by onlychainsaw2019 • 0
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