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0
votes
2
answers
82
views
2
answers
edgeR and lack of counts ID on CPM matrix
edger written 4 days ago by abrantes.patricia • 0
1
vote
2
answers
90
views
2
answers
EdgeR model not of full rank
edger model rank written 10 days ago by philip.freda • 0
1
vote
3
answers
64
views
3
answers
Adjusting for procedural effect
edger written 7 days ago by elineverbon • 20
0
votes
1
answer
39
views
1
answer
Error message when trying to access packages
edger software error bioconductor written 10 days ago by timothy.sullivan2 • 0 • updated 10 days ago by Aaron Lun • 15k
4
votes
5
answers
307
views
5
answers
Adjusting for procedural effect and deciding on statistical test
edger glmlrt() ql f-test written 8 months ago by elineverbon • 20
0
votes
1
answer
64
views
1
answer
bug in kegga() when using prior.prob?
limma edger written 12 days ago by Jenny Drnevich • 1.9k • updated 10 days ago by Gordon Smyth ♦ 30k
1
vote
1
answer
67
views
1
answer
accounting for phylogenetic non-independence in differential expression analysis
edger differential expression phylogenetic comparative methods written 17 days ago by noah.reid • 0 • updated 17 days ago by Aaron Lun • 15k
2
votes
2
answers
70
views
2
answers
Filtering DGEList object in edgeR
edger filter dgelist written 18 days ago by alakatos • 70 • updated 18 days ago by Gordon Smyth ♦ 30k
5
votes
1
answer
99
views
1
answer
Modeling input data in ChIP-seq experiments with EdgeR, DESeq(2) or Limma
chipseq limma edger deseq2 written 21 days ago by k.vitting.seerup • 0 • updated 21 days ago by Aaron Lun • 15k
2
votes
1
answer
60
views
1
answer
using edgeR or limma for 5C data normalization
limma edger deseq2 written 21 days ago by Bogdan • 470 • updated 21 days ago by Aaron Lun • 15k
0
votes
1
answer
47
views
1
answer
EdgeR dispersion and FDR
rnaseq edger fdr written 25 days ago by dsarbashis • 0 • updated 25 days ago by Aaron Lun • 15k
0
votes
2
answers
87
views
2
answers
kegga() p-value calculated differently in different edgeR versions
edger kegga written 28 days ago by cronanz • 0 • updated 27 days ago by Gordon Smyth ♦ 30k
2
votes
1
answer
58
views
1
answer
EdgeR -ANOVA-like test vs testing individual contrasts
edger anova contrast t-test written 28 days ago by Maiv • 0 • updated 28 days ago by Aaron Lun • 15k
0
votes
2
answers
66
views
2
answers
CRISPR/RNAi screen time course analysis
edger high-throughput screening written 29 days ago by knaxerova • 10
2
votes
1
answer
93
views
1
answer
Decide normalisation method in RUVseq for RNAseq data
rnaseq normalization edger ruvseq ruvnormalize written 4 weeks ago by manish20072013 • 0 • updated 4 weeks ago by davide risso • 380
4
votes
1
answer
131
views
1
answer
RNAseq with technical replicates: Does it sound right?
rnaseq edger technical replicates written 4 weeks ago by alakatos • 70 • updated 4 weeks ago by Ryan C. Thompson ♦ 5.8k
1
vote
1
answer
64
views
1
answer
edgeR reinstall failure: edgeR.rdb' is corrupt
edger package installation written 4 weeks ago by afreedman405 • 0 • updated 4 weeks ago by Aaron Lun • 15k
1
vote
1
answer
96
views
1
answer
edgeR 4 conditions
edger written 5 weeks ago by Paolo Kunderfranco • 350
4
votes
1
answer
136
views
1
answer
Why does Deseq, Deseq2, and EdgeR give vastly different results.
edger deseq deseq2 written 6 weeks ago by michael.steffen • 20
2
votes
2
answers
135
views
2
answers
Trouble with DESeq2, edgeR, and limma not accepting zeros in input
limma edger deseq2 written 6 weeks ago by Kaustav • 0 • updated 6 weeks ago by Gordon Smyth ♦ 30k
6
votes
1
answer
119
views
1
answer
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 6 weeks ago by wd • 10 • updated 6 weeks ago by Aaron Lun • 15k
0
votes
4
answers
145
views
4
answers
edgeR and batch effect
edger written 7 weeks ago by abrantes.patricia • 0
0
votes
1
answer
95
views
1
answer
setting contrast in edgeR for time series data
rnaseq edger makecontrasts written 6 weeks ago by wangzhang1988 • 0 • updated 6 weeks ago by Aaron Lun • 15k
1
vote
1
answer
90
views
1
answer
older version of edger installation
edger written 7 weeks ago by myprogramming2016 • 0 • updated 7 weeks ago by James W. MacDonald ♦ 43k
0
votes
1
answer
75
views
1
answer
egeR GLM approach
edger written 8 weeks ago by erika_lilly • 0 • updated 8 weeks ago by Aaron Lun • 15k
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