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7
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1
answer
98
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1
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Convert BAM to FASTQ
bam fastq written 24 days ago by ioannis.vardaxis • 30 • updated 24 days ago by Martin Morgan ♦♦ 23k
7
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3
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172
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3
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What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
single cell fastq written 6 weeks ago by Matthew Thornton • 300 • updated 6 weeks ago by Gordon Smyth ♦ 37k
0
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1
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177
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1
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Converting Fastq to Fasta in R
R bioinformatics fasta fastq written 3 months ago by christinafragel • 0 • updated 3 months ago by James W. MacDonald ♦ 49k
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0
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106
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Quantifying reporter expression to validate sequencing
alignment fasta fastq written 5 months ago by A • 40
0
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0
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223
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql ngs sangerseqr fastq seqinr written 11 months ago by JoeMG • 0
4
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1
answer
279
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1
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The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread fastq pacbio written 14 months ago by benjamin.j.callahan • 40 • updated 14 months ago by Martin Morgan ♦♦ 23k
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How to check that the reads in two fastq files are in the same order
shortread fastq written 2.3 years ago by Frocha • 10 • updated 2.3 years ago by James W. MacDonald ♦ 49k
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0
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412
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How to start CrispRVariants with fastq file starting point
R fastq crispr written 2.4 years ago by kfburbach • 0
2
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1
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418
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1
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Uniting SRA Data into a single file
sradb R fastq sra written 2.5 years ago by grecoandreauni • 0 • updated 2.5 years ago by Martin Morgan ♦♦ 23k
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2
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853
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2
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subset from fastq file
fastq written 2.6 years ago by K • 50
0
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1
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792
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1
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Error downloading using SRAdb
sradb ftp fastq written 3.1 years ago by yugi1001 • 0 • updated 3.1 years ago by Jack Zhu • 170
6
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3
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1.3k
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3
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.fastq to .txt conversion for EdgeR package and merging two paired end sequence files
normalization edger fastq tmm txt written 3.4 years ago by hamidrezarazzaghian • 0
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1
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856
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1
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need help manipulating fastq file
fastq written 3.6 years ago by K • 50 • updated 3.6 years ago by Martin Morgan ♦♦ 23k
2
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1
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1
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merge fastq.gz in R? (or in Windows?)
rnaseq bioconductor fastq written 3.8 years ago by mk.applebee • 0
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2
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Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 fastq deseqdataset rnaseqgene reference genome written 3.9 years ago by greg.mulhearn • 0 • updated 3.9 years ago by James W. MacDonald ♦ 49k
2
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3
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850
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3
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ShortRead trim sequence at specific position
shortread fastq written 4.0 years ago by danova_fr • 20
3
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1
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1.5k
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1
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fastqSampler and writeFastq in shortread package
shortread fastq write written 4.2 years ago by francesca.defilippis • 60 • updated 4.2 years ago by Martin Morgan ♦♦ 23k
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