Showing: fastq • reset
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ShortRead Error message: invalid character '
shortread fastq written 12 hours ago by lauren.fitch • 0
2
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1
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150
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1
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Boxplot function not showing all reads length on x-axis
sequencing rsubread reads boxplot fastq written 4 months ago by Raito92 • 40 • updated 4 months ago by Wei Shi • 3.2k
7
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1
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191
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Convert BAM to FASTQ
bam fastq written 6 months ago by ioannis.vardaxis • 30 • updated 6 months ago by Martin Morgan ♦♦ 23k
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3
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554
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3
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What are the methods to get count data per cell from single cell fastq given only R1, R2, and I1 fastq files
single cell fastq written 7 months ago by Matthew Thornton • 320 • updated 7 months ago by Gordon Smyth ♦ 38k
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546
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Converting Fastq to Fasta in R
R bioinformatics fasta fastq written 8 months ago by christinafragel • 0 • updated 8 months ago by James W. MacDonald ♦ 51k
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161
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Quantifying reporter expression to validate sequencing
alignment fasta fastq written 11 months ago by A • 40
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297
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql ngs sangerseqr fastq seqinr written 17 months ago by JoeMG • 0
4
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1
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369
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1
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The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread fastq pacbio written 20 months ago by benjamin.j.callahan • 40 • updated 20 months ago by Martin Morgan ♦♦ 23k
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How to check that the reads in two fastq files are in the same order
shortread fastq written 2.8 years ago by Frocha • 10 • updated 2.8 years ago by James W. MacDonald ♦ 51k
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478
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How to start CrispRVariants with fastq file starting point
R fastq crispr written 2.9 years ago by kfburbach • 0
2
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1
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496
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1
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Uniting SRA Data into a single file
sradb R fastq sra written 2.9 years ago by grecoandreauni • 0 • updated 2.9 years ago by Martin Morgan ♦♦ 23k
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984
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subset from fastq file
fastq written 3.1 years ago by K • 50
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904
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Error downloading using SRAdb
sradb ftp fastq written 3.6 years ago by yugi1001 • 0 • updated 3.6 years ago by Jack Zhu • 170
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3
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.fastq to .txt conversion for EdgeR package and merging two paired end sequence files
normalization edger fastq tmm txt written 3.9 years ago by hamidrezarazzaghian • 0
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956
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need help manipulating fastq file
fastq written 4.1 years ago by K • 50 • updated 4.1 years ago by Martin Morgan ♦♦ 23k
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1
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1
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merge fastq.gz in R? (or in Windows?)
rnaseq bioconductor fastq written 4.2 years ago by mk.applebee • 0
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Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 fastq deseqdataset rnaseqgene reference genome written 4.4 years ago by greg.mulhearn • 0 • updated 4.4 years ago by James W. MacDonald ♦ 51k
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945
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ShortRead trim sequence at specific position
shortread fastq written 4.5 years ago by danova_fr • 20
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fastqSampler and writeFastq in shortread package
shortread fastq write written 4.7 years ago by francesca.defilippis • 60 • updated 4.7 years ago by Martin Morgan ♦♦ 23k
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