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0
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0
answers
40
views
0
answers
msmsTests, NA values in test.results output
proteomics fdr msmstests written 1 day ago by laural710 • 0
3
votes
1
answer
101
views
1
answer
p.adjust function fdr and BH
fdr bh written 3 months ago by zhang.jianhai • 0 • updated 3 months ago by Gordon Smyth ♦ 35k
3
votes
1
answer
135
views
1
answer
Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
edger R bioconductor fdr diffferential expression written 3 months ago by Biologist • 70 • updated 3 months ago by James W. MacDonald ♦ 48k
0
votes
1
answer
156
views
1
answer
Defining subsets for FDR correction
deseq2 fdr ihw written 4 months ago by sven.schenk • 10 • updated 4 months ago by Michael Love ♦ 19k
40
votes
3
answers
2.8k
views
3
answers
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
deseq rna-seq fdr p-value written 17 months ago by yjiangnan • 10 • updated 10 months ago by Wade Davis • 60
5
votes
2
answers
923
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 15 months ago by thyagoleal • 20 • updated 14 months ago by Wolfgang Huber ♦ 13k
0
votes
1
answer
207
views
1
answer
EdgeR dispersion and FDR
rnaseq edger fdr written 15 months ago by dsarbashis • 0 • updated 15 months ago by Aaron Lun • 21k
2
votes
1
answer
595
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 16 months ago by bhgyu • 30 • updated 16 months ago by Aaron Lun • 21k
0
votes
1
answer
402
views
1
answer
FUNCTIONAL ENRICHMENT ANALYSIS
fdr genecodis3 written 17 months ago by nia • 10 • updated 17 months ago by Robert Castelo • 2.2k
2
votes
1
answer
319
views
1
answer
fdr score for degs
fdr deg written 17 months ago by nia • 10 • updated 17 months ago by svlachavas • 610
1
vote
2
answers
1.1k
views
2
answers
Inspection and Correction of p-values in DESeq2 pipeline by Bernd
deseq2 fdr fdrtool written 19 months ago by deena • 10 • updated 19 months ago by Bernd Klaus • 490
1
vote
1
answer
489
views
1
answer
Question about testing main factors and doing FDR correction in a multiple-factor design in DESeq2.
deseq2 fdr multiple factor design fdrtool written 20 months ago by marieke • 0 • updated 20 months ago by Michael Love ♦ 19k
2
votes
1
answer
1.6k
views
1
answer
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edger statistics bioconductor differential gene expression fdr written 22 months ago by jol.espinoz • 20
0
votes
1
answer
361
views
1
answer
Change the FDR in DEXSeq
fdr padj written 24 months ago by arom2 • 0 • updated 24 months ago by Jakub • 30
29
votes
2
answers
29k
views
13 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.8 years ago by Jack Luo • 380 • updated 2.0 years ago by Gordon Smyth ♦ 35k
0
votes
1
answer
724
views
1
answer
DESeq with hierarchical FDR correction
deseq2 fdr written 3.2 years ago by liam.philip.shaw • 0 • updated 3.2 years ago by Michael Love ♦ 19k
2
votes
9
answers
913
views
9
answers
BiSeq trimClusters FDR.loc confusion
biseq data fdr results written 3.5 years ago by mnaymik • 10
3
votes
2
answers
734
views
2
answers
help! new to R! Detection p value cut off
microarray fdr p values written 3.6 years ago by a • 0
1
vote
3
answers
1.1k
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 3.8 years ago by OLIVER, DAVID • 10 • updated 3.8 years ago by Gordon Smyth ♦ 35k
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