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5
votes
2
answers
596
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 12 weeks ago by thyagoleal • 20 • updated 12 weeks ago by Wolfgang Huber ♦ 13k
0
votes
1
answer
76
views
1
answer
EdgeR dispersion and FDR
rnaseq edger fdr written 3 months ago by dsarbashis • 0 • updated 3 months ago by Aaron Lun • 16k
2
votes
1
answer
184
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 4 months ago by bhgyu • 0 • updated 4 months ago by Aaron Lun • 16k
30
votes
2
answers
851
views
2
answers
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
deseq rna-seq fdr p-value written 5 months ago by yjiangnan • 0 • updated 5 months ago by Robert Castelo • 2.0k
0
votes
1
answer
190
views
1
answer
FUNCTIONAL ENRICHMENT ANALYSIS
fdr genecodis3 written 5 months ago by nia • 0 • updated 5 months ago by Robert Castelo • 2.0k
2
votes
1
answer
170
views
1
answer
fdr score for degs
fdr deg written 5 months ago by nia • 0 • updated 5 months ago by svlachavas • 560
0
votes
2
answers
389
views
2
answers
Inspection and Correction of p-values in DESeq2 pipeline by Bernd
deseq2 fdr fdrtool written 7 months ago by deena • 0 • updated 7 months ago by Bernd Klaus • 460
1
vote
1
answer
239
views
1
answer
Question about testing main factors and doing FDR correction in a multiple-factor design in DESeq2.
deseq2 fdr multiple factor design fdrtool written 8 months ago by marieke • 0 • updated 8 months ago by Michael Love ♦ 14k
2
votes
1
answer
590
views
1
answer
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edger statistics bioconductor differential gene expression fdr written 10 months ago by jol.espinoz • 10
0
votes
1
answer
238
views
1
answer
Change the FDR in DEXSeq
fdr padj written 12 months ago by arom2 • 0 • updated 12 months ago by Jakub • 30
20
votes
2
answers
19k
views
6 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 4.8 years ago by Jack Luo • 340 • updated 12 months ago by Gordon Smyth ♦ 31k
0
votes
1
answer
514
views
1
answer
DESeq with hierarchical FDR correction
deseq2 fdr written 2.2 years ago by liam.philip.shaw • 0 • updated 2.2 years ago by Michael Love ♦ 14k
2
votes
9
answers
648
views
9
answers
BiSeq trimClusters FDR.loc confusion
biseq data fdr results written 2.5 years ago by mnaymik • 10
3
votes
2
answers
582
views
2
answers
help! new to R! Detection p value cut off
microarray fdr p values written 2.6 years ago by a • 0
1
vote
3
answers
768
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 2.8 years ago by OLIVER, DAVID • 10 • updated 2.8 years ago by Gordon Smyth ♦ 31k
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