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2
votes
1
answer
110
views
1
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How adjusted p-values are calculated in limma
limma statistics R fdr transcriptomics written 10 weeks ago by Wuschel • 10 • updated 10 weeks ago by Gordon Smyth ♦ 39k
1
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1
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154
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1
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FDR and mixed FDR in limma fry()
limma fdr written 6 months ago by Regeroka • 0 • updated 6 months ago by Gordon Smyth ♦ 39k
0
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1
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176
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1
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Dependence of FDR and P-values on sample size
edger fdr p-value differential analysis benjamini-hochberg written 9 months ago by ilovesuperheroes1993 • 0 • updated 9 months ago by Aaron Lun • 25k
2
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1
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400
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1
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msmsTests, NA values in test.results output
proteomics fdr msmstests written 14 months ago by laural710 • 0 • updated 14 months ago by Laurent Gatto ♦ 1.2k
3
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1
answer
986
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1
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p.adjust function fdr and BH
fdr bh written 17 months ago by zhang.jianhai • 0 • updated 17 months ago by Gordon Smyth ♦ 39k
3
votes
1
answer
385
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1
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Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
edger R bioconductor fdr diffferential expression written 18 months ago by Biologist • 70 • updated 18 months ago by James W. MacDonald ♦ 52k
0
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1
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417
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1
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Defining subsets for FDR correction
deseq2 fdr ihw written 18 months ago by sven.schenk • 10 • updated 18 months ago by Michael Love ♦ 26k
40
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3
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4.6k
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3
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Are published RNA seq data analyses often wrong in calculating p-values and FDR?
deseq rna-seq fdr p-value written 2.6 years ago by yjiangnan • 10 • updated 2.0 years ago by Wade Davis • 60
6
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2
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1.9k
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2
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Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 2.4 years ago by tcalvo • 30 • updated 2.4 years ago by Wolfgang Huber ♦ 13k
0
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1
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385
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1
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EdgeR dispersion and FDR
rnaseq edger fdr written 2.5 years ago by dsarbashis • 0 • updated 2.5 years ago by Aaron Lun • 25k
2
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1
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1.1k
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1
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Limma toptable interpretation check
microarray limma fdr results p-value written 2.5 years ago by bhgyu • 30 • updated 2.5 years ago by Aaron Lun • 25k
0
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1
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613
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1
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FUNCTIONAL ENRICHMENT ANALYSIS
fdr genecodis3 written 2.6 years ago by nia • 10 • updated 2.6 years ago by Robert Castelo • 2.3k
2
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489
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1
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fdr score for degs
fdr deg written 2.6 years ago by nia • 10 • updated 2.6 years ago by svlachavas • 740
1
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2
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1.6k
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2
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Inspection and Correction of p-values in DESeq2 pipeline by Bernd
deseq2 fdr fdrtool written 2.8 years ago by deena • 10 • updated 2.8 years ago by Bernd Klaus • 560
1
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1
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811
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1
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Question about testing main factors and doing FDR correction in a multiple-factor design in DESeq2.
deseq2 fdr multiple factor design fdrtool written 2.8 years ago by marieke • 0 • updated 2.8 years ago by Michael Love ♦ 26k
2
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1
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2.8k
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1
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edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edger statistics bioconductor differential gene expression fdr written 3.0 years ago by jol.espinoz • 20
0
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1
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554
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1
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Change the FDR in DEXSeq
fdr padj written 3.2 years ago by arom2 • 0 • updated 3.1 years ago by Jakub • 30
42
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2
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37k
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22 follow
2
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conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 7.0 years ago by Jack Luo • 410 • updated 3.2 years ago by Gordon Smyth ♦ 39k
0
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1
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935
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1
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DESeq with hierarchical FDR correction
deseq2 fdr written 4.3 years ago by liam.philip.shaw • 0 • updated 4.3 years ago by Michael Love ♦ 26k
2
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9
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1.2k
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9
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BiSeq trimClusters FDR.loc confusion
biseq data fdr results written 4.7 years ago by mnaymik • 10
3
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2
answers
914
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2
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help! new to R! Detection p value cut off
microarray fdr p values written 4.8 years ago by a • 0
1
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3
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1.4k
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3
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strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 5.0 years ago by OLIVER, DAVID • 10 • updated 5.0 years ago by Gordon Smyth ♦ 39k
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