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3
votes
1
answer
70
views
1
answer
p.adjust function fdr and BH
fdr bh written 5 weeks ago by zhang.jianhai • 0 • updated 5 weeks ago by Gordon Smyth ♦ 34k
3
votes
1
answer
108
views
1
answer
Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
edger R bioconductor fdr diffferential expression written 7 weeks ago by Biologist • 70 • updated 7 weeks ago by James W. MacDonald ♦ 47k
0
votes
1
answer
122
views
1
answer
Defining subsets for FDR correction
deseq2 fdr ihw written 9 weeks ago by sven.schenk • 10 • updated 9 weeks ago by Michael Love ♦ 19k
40
votes
3
answers
2.4k
views
3
answers
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
deseq rna-seq fdr p-value written 15 months ago by yjiangnan • 10 • updated 8 months ago by Wade Davis • 60
5
votes
2
answers
820
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 12 months ago by thyagoleal • 20 • updated 12 months ago by Wolfgang Huber ♦ 13k
0
votes
1
answer
180
views
1
answer
EdgeR dispersion and FDR
rnaseq edger fdr written 13 months ago by dsarbashis • 0 • updated 13 months ago by Aaron Lun • 20k
2
votes
1
answer
519
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 14 months ago by bhgyu • 30 • updated 14 months ago by Aaron Lun • 20k
0
votes
1
answer
352
views
1
answer
FUNCTIONAL ENRICHMENT ANALYSIS
fdr genecodis3 written 15 months ago by nia • 10 • updated 15 months ago by Robert Castelo • 2.2k
2
votes
1
answer
298
views
1
answer
fdr score for degs
fdr deg written 15 months ago by nia • 10 • updated 15 months ago by svlachavas • 610
1
vote
2
answers
961
views
2
answers
Inspection and Correction of p-values in DESeq2 pipeline by Bernd
deseq2 fdr fdrtool written 17 months ago by deena • 10 • updated 17 months ago by Bernd Klaus • 490
1
vote
1
answer
458
views
1
answer
Question about testing main factors and doing FDR correction in a multiple-factor design in DESeq2.
deseq2 fdr multiple factor design fdrtool written 18 months ago by marieke • 0 • updated 18 months ago by Michael Love ♦ 19k
2
votes
1
answer
1.4k
views
1
answer
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edger statistics bioconductor differential gene expression fdr written 20 months ago by jol.espinoz • 10
0
votes
1
answer
336
views
1
answer
Change the FDR in DEXSeq
fdr padj written 22 months ago by arom2 • 0 • updated 22 months ago by Jakub • 30
25
votes
2
answers
27k
views
8 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.7 years ago by Jack Luo • 360 • updated 22 months ago by Gordon Smyth ♦ 34k
0
votes
1
answer
694
views
1
answer
DESeq with hierarchical FDR correction
deseq2 fdr written 3.0 years ago by liam.philip.shaw • 0 • updated 3.0 years ago by Michael Love ♦ 19k
2
votes
9
answers
845
views
9
answers
BiSeq trimClusters FDR.loc confusion
biseq data fdr results written 3.3 years ago by mnaymik • 10
3
votes
2
answers
713
views
2
answers
help! new to R! Detection p value cut off
microarray fdr p values written 3.4 years ago by a • 0
1
vote
3
answers
1.0k
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 3.7 years ago by OLIVER, DAVID • 10 • updated 3.7 years ago by Gordon Smyth ♦ 34k
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