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5
votes
2
answers
316
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 28 days ago by thyagoleal • 20 • updated 26 days ago by Wolfgang Huber ♦ 13k
0
votes
1
answer
59
views
1
answer
EdgeR dispersion and FDR
rnaseq edger fdr written 7 weeks ago by dsarbashis • 0 • updated 7 weeks ago by Aaron Lun • 16k
2
votes
1
answer
133
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 11 weeks ago by bhgyu • 0 • updated 11 weeks ago by Aaron Lun • 16k
25
votes
2
answers
673
views
2
answers
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
deseq rna-seq fdr p-value written 3 months ago by yjiangnan • 0 • updated 3 months ago by Robert Castelo • 2.0k
0
votes
1
answer
141
views
1
answer
FUNCTIONAL ENRICHMENT ANALYSIS
fdr genecodis3 written 3 months ago by nia • 0 • updated 3 months ago by Robert Castelo • 2.0k
2
votes
1
answer
138
views
1
answer
fdr score for degs
fdr deg written 3 months ago by nia • 0 • updated 3 months ago by svlachavas • 550
0
votes
2
answers
333
views
2
answers
Inspection and Correction of p-values in DESeq2 pipeline by Bernd
deseq2 fdr fdrtool written 5 months ago by deena • 0 • updated 5 months ago by Bernd Klaus • 430
1
vote
1
answer
199
views
1
answer
Question about testing main factors and doing FDR correction in a multiple-factor design in DESeq2.
deseq2 fdr multiple factor design fdrtool written 6 months ago by marieke • 0 • updated 6 months ago by Michael Love ♦ 13k
2
votes
1
answer
470
views
1
answer
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edger statistics bioconductor differential gene expression fdr written 8 months ago by jol.espinoz • 10
0
votes
1
answer
210
views
1
answer
Change the FDR in DEXSeq
fdr padj written 10 months ago by arom2 • 0 • updated 10 months ago by Jakub • 30
19
votes
2
answers
17k
views
6 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 4.7 years ago by Jack Luo • 340 • updated 10 months ago by Gordon Smyth ♦ 31k
0
votes
1
answer
478
views
1
answer
DESeq with hierarchical FDR correction
deseq2 fdr written 2.0 years ago by liam.philip.shaw • 0 • updated 2.0 years ago by Michael Love ♦ 13k
2
votes
9
answers
607
views
9
answers
BiSeq trimClusters FDR.loc confusion
biseq data fdr results written 2.4 years ago by mnaymik • 10
3
votes
2
answers
547
views
2
answers
help! new to R! Detection p value cut off
microarray fdr p values written 2.5 years ago by a • 0
1
vote
3
answers
732
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 2.7 years ago by OLIVER, DAVID • 10 • updated 2.7 years ago by Gordon Smyth ♦ 31k
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