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0
votes
1
answer
83
views
1
answer
Defining subsets for FDR correction
deseq2 fdr ihw written 5 days ago by sven.schenk • 10 • updated 5 days ago by Michael Love ♦ 18k
40
votes
3
answers
2.0k
views
3
answers
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
deseq rna-seq fdr p-value written 13 months ago by yjiangnan • 10 • updated 6 months ago by Wade Davis • 60
5
votes
2
answers
763
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 10 months ago by thyagoleal • 20 • updated 10 months ago by Wolfgang Huber ♦ 13k
0
votes
1
answer
155
views
1
answer
EdgeR dispersion and FDR
rnaseq edger fdr written 11 months ago by dsarbashis • 0 • updated 11 months ago by Aaron Lun • 19k
2
votes
1
answer
462
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 12 months ago by bhgyu • 30 • updated 12 months ago by Aaron Lun • 19k
0
votes
1
answer
322
views
1
answer
FUNCTIONAL ENRICHMENT ANALYSIS
fdr genecodis3 written 13 months ago by nia • 10 • updated 13 months ago by Robert Castelo • 2.2k
2
votes
1
answer
280
views
1
answer
fdr score for degs
fdr deg written 13 months ago by nia • 10 • updated 13 months ago by svlachavas • 570
1
vote
2
answers
836
views
2
answers
Inspection and Correction of p-values in DESeq2 pipeline by Bernd
deseq2 fdr fdrtool written 15 months ago by deena • 10 • updated 15 months ago by Bernd Klaus • 480
1
vote
1
answer
414
views
1
answer
Question about testing main factors and doing FDR correction in a multiple-factor design in DESeq2.
deseq2 fdr multiple factor design fdrtool written 16 months ago by marieke • 0 • updated 16 months ago by Michael Love ♦ 18k
2
votes
1
answer
1.3k
views
1
answer
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edger statistics bioconductor differential gene expression fdr written 18 months ago by jol.espinoz • 10
0
votes
1
answer
320
views
1
answer
Change the FDR in DEXSeq
fdr padj written 20 months ago by arom2 • 0 • updated 20 months ago by Jakub • 30
23
votes
2
answers
25k
views
7 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.5 years ago by Jack Luo • 350 • updated 20 months ago by Gordon Smyth ♦ 33k
0
votes
1
answer
670
views
1
answer
DESeq with hierarchical FDR correction
deseq2 fdr written 2.8 years ago by liam.philip.shaw • 0 • updated 2.8 years ago by Michael Love ♦ 18k
2
votes
9
answers
827
views
9
answers
BiSeq trimClusters FDR.loc confusion
biseq data fdr results written 3.2 years ago by mnaymik • 10
3
votes
2
answers
688
views
2
answers
help! new to R! Detection p value cut off
microarray fdr p values written 3.3 years ago by a • 0
1
vote
3
answers
974
views
3
answers
strange FDR distribution for RNA-seq sample with edgeR
edger rna-seq fdr written 3.5 years ago by OLIVER, DAVID • 10 • updated 3.5 years ago by Gordon Smyth ♦ 33k
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