Bioconductor Forum

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goprofiles AnnotationForge Bimap GO

6.5 years ago • updated 6.4 years ago artur • 80

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GO goProfiles GO goProfiles

6.9 years ago Arnaud Mounier • 40

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GO Organism goProfiles GO Organism goProfiles

7.5 years ago Marc Carlson ♦ 7.2k

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goProfiles goProfiles

7.5 years ago Guest User ♦ 12k

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goProfiles GeneAnswers goProfiles GeneAnswers

• updated 8.1 years ago Marc Carlson ♦ 7.2k

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GO goProfiles GO goProfiles

• updated 8.4 years ago Steve Lianoglou 13k

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GO goProfiles GO goProfiles

• updated 10.7 years ago Marc Carlson ♦ 7.2k

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GO Cancer Prostate goProfiles GO Cancer Prostate goProfiles

• updated 10.7 years ago James W. MacDonald 56k

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Category goProfiles Category goProfiles

10.7 years ago wei tie • 30

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Annotation GO topGO goProfiles Annotation GO topGO goProfiles

11.5 years ago Johannes Hanson • 30

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GO graph goProfiles GO graph goProfiles

11.7 years ago Jean-Pierre Desvignes • 60

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goProfiles goProfiles

• updated 11.7 years ago Steve Lianoglou 13k

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GO mouse4302 goProfiles GO mouse4302 goProfiles

• updated 12.7 years ago Alex Sanchez • 20

13 results • Page 1 of 1

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Answer: Can you colour dendrogram branch clusters in pheatmap? by Kevin Blighe 2.5k

Hi, you should be able to do this by first creating the dendrogram and hclust object via CRAN's *dendextend* package, and then supplying …

Answer: Splitting multiple groups - three different ages by Michael Love 32k

It may be hard to tell in this plot because PC1 explains so much of the difference. The variability is not so stark as in other cases, and …

Answer: Same methylation probe ID with different locus annotations in Illumina 27k and 4 by Kevin Blighe 2.5k

Hi, It seems that the manufacturer (Illumina) simply moved the target locus, which often occurs across array designs. In the case of c…

Answer: DESeq2, tximport normalization, normalization factors, size factors by Michael Love 32k

1) "counts(dds,normalized=TRUE)" returns counts that are corrected for library size and transcript length. Yes, and the indication is th…

Comment: DiffBind dba.report() output: Is "concentration" normalized? by Rory Stark ♦ 3.6k

As I understand it, you have two contrasts that share one group of samples. You expect the concentrations reported for the shared group to …

Votes

Comment: DEseq2 results

Answer: Diffbind principal components

Comment: Removing rows (countData) from a DESeq Object

Answer: Using group instead of interaction term on a custom edited matrix

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Scholar to Fischer-philipp • 30