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Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 8 months ago by csijst0 • updated 8 months ago by Michael Love22k
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convert Gene collection to gene list for camera function
limma gseabase written 12 months ago by Seymoo0 • updated 12 months ago by James W. MacDonald49k
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Question on GeneSetCollection in GSEABase
gseabase geneset written 2.1 years ago by siajunren0 • updated 2.1 years ago by Martin Morgan ♦♦ 22k
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GSEABase getGmt() fails when more than 1 line contains duplicates
gseabase bug written 2.4 years ago by dondelelcaro10 • updated 2.4 years ago by Martin Morgan ♦♦ 22k
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GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 2.7 years ago by Matthias Z.20 • updated 2.7 years ago by Gordon Smyth36k
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Creating custom geneset
gseabase written 3.0 years ago by pbachali10
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Gene set enrichment analysis
topgo gseabase gostat gsea written 4.2 years ago by kaushal Raj Chaudhary10 • updated 4.2 years ago by Levi Waldron820
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Running the GSEA algorithm
microarray genesetenrichment pgsea gseabase gsri seqgsea written 4.9 years ago by Leif Väremo70 • updated 4.9 years ago by Steve Lianoglou12k
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Running the GSEA algorithm
infrastructure pgsea gseabase seqgsea written 4.9 years ago by enricoferrero570 • updated 4.9 years ago by Julian Gehring1.3k
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conversion of geneset species ID
gseabase written 7.5 years ago by Iain Gallagher920 • updated 7.5 years ago by Martin Morgan ♦♦ 22k
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creating a UniprotIdentifier within GSEABase
annotation cancer hgu95av2 convert gseabase written 7.6 years ago by Mark Cowley910 • updated 7.5 years ago by Martin Morgan ♦♦ 22k
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Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy gseabase written 8.2 years ago by Jillian Rowe20 • updated 8.2 years ago by Martin Morgan ♦♦ 22k
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GSEABase and Broad Inst Sets
annotation hgu133plus2 hgu95av2 gseabase written 8.6 years ago by Iain Gallagher920 • updated 8.6 years ago by Martin Morgan ♦♦ 22k
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