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Comment: Genomics data by Basti ▴ 540
This is a totally off-topic question of this forum and very vague, moreover we are not your supervisor and cannot guide you on the research…
Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10
Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…
Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k
I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…
Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k
Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…
Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0
> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…
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Answer: Which input file is used for DGEList in EgdeR?
Answer: Identifying DEGs using lfcshrink()
Answer: Is this DESeq2 interactions design correct?
Comment: STRINGdb string_db$map error
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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