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Microarray Analysis of Sleep Deprivation Data Experimental Design
limma R gene expression diffeential expression microarray analysis written 1 day ago by bdighera • 0 • updated 12 hours ago by James W. MacDonald ♦ 49k
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RNA-seq batch correction using technical replicates profiled across batches
limma edger sva deseq2 ruvseq written 2 days ago by enricoferrero • 570 • updated 1 day ago by Gordon Smyth ♦ 36k
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classifyTestsP vs topTable
limma written 14.4 years ago by Tarca Adi Laurentiu • 100 • updated 2 days ago by Gordon Smyth ♦ 36k
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Limma p-values, fdr and classifyTests
limma written 14.5 years ago by Matthew Hannah • 940 • updated 2 days ago by Gordon Smyth ♦ 36k
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Question about difference between decideTests() and classifyTestsP() in limma
limma written 2 days ago by lmsh • 0 • updated 2 days ago by Gordon Smyth ♦ 36k
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How to calculate log2 fold change between two groups in a microarray study
limma written 7 days ago by mat149 • 30 • updated 7 days ago by Gordon Smyth ♦ 36k
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Order of contrasts.fit call (before or after eBayes)
limma written 8 days ago by andrew.birnberg • 20 • updated 7 days ago by Gordon Smyth ♦ 36k
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LIMMA dupcor() function time issue.
microarray limma block written 8 days ago by tleona3 • 0 • updated 8 days ago by Gordon Smyth ♦ 36k
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Comparing groups with paired samples by using limma
limma paired analysis written 8 days ago by annadv77 • 0 • updated 8 days ago by Gordon Smyth ♦ 36k
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Highly uneven mapping rates and counts between samples
normalization limma deseq2 written 13 days ago by chris86 • 380 • updated 13 days ago by Aaron Lun • 22k
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Limma design/contrast correct?
microarray limma paired design mixed model written 15 days ago by rasmus.agren • 0 • updated 15 days ago by Aaron Lun • 22k
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LIMMA time series spline model.matrix design setup
limma design model.matrix time series splines written 18 days ago by tleona3 • 0 • updated 17 days ago by Aaron Lun • 22k
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My linear regression model is giving me too many differentially expressed genes
limma edger differential gene expression rna-seq linear regression written 18 days ago by ravelarvargas • 0 • updated 18 days ago by Aaron Lun • 22k
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Limma design matrix separate channel analysis with same control
limma design matrix gene expression written 18 days ago by Guillaume Robert • 0 • updated 18 days ago by Gordon Smyth ♦ 36k
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varianceStabilizingTransformation for clustering, deconvolution
normalization limma deseq2 deconvolution written 22 days ago by bruce.moran • 20 • updated 22 days ago by Michael Love ♦ 22k
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Limma import array layout GenePix files
microarray limma layout written 25 days ago by Guillaume Robert • 0 • updated 25 days ago by Gordon Smyth ♦ 36k
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Taking into account strong batch effect in microarray differential expression analysis with limma
microarray limma batch effect de hugenest written 27 days ago by svlachavas • 640 • updated 27 days ago by Ryan C. Thompson ♦ 7.2k
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vennDiagram in Limma package
limma written 27 days ago by MicheK • 0 • updated 27 days ago by James W. MacDonald ♦ 49k
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Limma filtering low expressed probes
microarray limma written 28 days ago by Guillaume Robert • 0 • updated 28 days ago by Gordon Smyth ♦ 36k
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Is it allowed to fit two models to make between and within subjects comparisons separately?
rnaseq limma edger deseq2 random effects written 29 days ago by tcalvo • 30
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Need expert suggestion about Bioconductor package for microarray data anlaysis
affy limma written 4 weeks ago by mahmudornob • 0
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Limma import .gpr file error
microarray limma gpr written 4 weeks ago by Guillaume Robert • 0 • updated 4 weeks ago by Gordon Smyth ♦ 36k
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Limma time course experiments
limma written 4 weeks ago by shuvadeep.maity • 0
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Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma decidetests stager written 4 weeks ago by maltethodberg • 110 • updated 4 weeks ago by Koen Van den Berge • 170
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Limma analysis, controlling for Donors.
microarray limma R written 5 weeks ago by reubenmcgregor88 • 0 • updated 5 weeks ago by Gordon Smyth ♦ 36k
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