2
votes
1
answer
91
views
1
answer
Identify up and down regulated genes in affymetrix data
microarray affy limma written 18 hours ago by j_jamal960 • updated 8 hours ago by Gordon Smyth30k
4
votes
2
answers
51
views
2
answers
5
votes
2
answers
112
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 3 days ago by thyagoleal20 • updated 1 day ago by Wolfgang Huber13k
0
votes
1
answer
68
views
1
answer
confusion with tximport options and resulting matrix
rnaseq limma voom tximport rsem written 2 days ago by arubio0 • updated 2 days ago by Gordon Smyth30k
1
vote
1
answer
69
views
1
answer
Error from eBayes in limma package
limma error ebayes written 2 days ago by calen.p.ryan0 • updated 2 days ago by James W. MacDonald43k
3
votes
4
answers
2.7k
views
4
answers
Volcano plot labeling troubles
limma volcanoplot written 2.7 years ago by mccallionc4030 • updated 3 days ago by Gordon Smyth30k
1
vote
1
answer
65
views
1
answer
Paired t-test with 2 groups, how to I tell the DEGs between them?
limma written 3 days ago by chris86290 • updated 3 days ago by James W. MacDonald43k
1
vote
2
answers
76
views
2
answers
2
votes
3
answers
3.1k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 8.7 years ago by Daren Tan150 • updated 5 days ago by Gordon Smyth30k
7
votes
1
answer
180
views
1
answer
4
votes
1
answer
73
views
1
answer
4
votes
1
answer
156
views
1
answer
3
votes
2
answers
78
views
2
answers
Limma validity for only hundreds of genes/metabolites
limma moderated t-test metabolite data written 12 days ago by iglezer0 • updated 12 days ago by Aaron Lun15k
0
votes
1
answer
103
views
1
answer
prior.prob has opposite effects in goana and kegga?
limma goana kegga missmethyl gometh written 10 weeks ago by Jenny Drnevich1.9k • updated 13 days ago by Gordon Smyth30k
3
votes
2
answers
77
views
2
answers
0
votes
1
answer
64
views
1
answer
bug in kegga() when using prior.prob?
limma edger written 15 days ago by Jenny Drnevich1.9k • updated 14 days ago by Gordon Smyth30k
1
vote
1
answer
84
views
1
answer
0
votes
2
answers
271
views
2
answers
base of B-value log in Limma
cancer limma written 11.2 years ago by Richard Friedman2.0k • updated 15 days ago by Gordon Smyth30k
0
votes
1
answer
610
views
1
answer
[Limma] Using P value or B statistics for cutoff?
limma written 12.4 years ago by Wu, Xiwei350 • updated 15 days ago by Gordon Smyth30k
3
votes
1
answer
54
views
1
answer
7
votes
3
answers
589
views
5 follow
3
answers
2
votes
2
answers
82
views
2
answers
1
vote
1
answer
77
views
1
answer
differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix written 24 days ago by hoe0 • updated 24 days ago by Ryan C. Thompson5.8k
5
votes
1
answer
104
views
1
answer
2
votes
1
answer
65
views
1
answer
using edgeR or limma for 5C data normalization
limma edger deseq2 written 25 days ago by Bogdan470 • updated 24 days ago by Aaron Lun15k
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