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0
votes
1
answer
39
views
1
answer
Absence of significant gene in DEG list
microarray limma written 1 day ago by nia • 10 • updated 13 hours ago by Aaron Lun • 19k
1
vote
2
answers
57
views
2
answers
Compare groups of different RNAseq sets
limma batch effect written 1 day ago by b.nota • 290 • updated 1 day ago by Gordon Smyth ♦ 33k
1
vote
2
answers
142
views
2
answers
Comparison between limma and edgeR of reads ratio
limma edger offset written 6 days ago by catpaw.tw • 0 • updated 3 days ago by Gordon Smyth ♦ 33k
2
votes
1
answer
56
views
1
answer
Limma model for paired and pool together
rnaseq limma design written 8 days ago by b.nota • 290 • updated 8 days ago by Ryan C. Thompson ♦ 6.5k
2
votes
1
answer
111
views
1
answer
Design/contrast matrix for Multivariate experimental design in limma
microarray limma design and contrast matrix written 10 days ago by 1234anjalianjali1234 • 0 • updated 10 days ago by Gordon Smyth ♦ 33k
2
votes
1
answer
74
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1
answer
limma RNA-seq analysis of human data
limma human heterogenous written 10 days ago by g.e.novakovsky • 0 • updated 10 days ago by Aaron Lun • 19k
2
votes
1
answer
91
views
1
answer
Error in ebayes in limma when analyzing GTEx data
limma voom gtex written 13 days ago by Darklings • 0
3
votes
1
answer
105
views
1
answer
How to find the degree of freedom, effect size and the variance of effect size for each contrast
microarray limma written 6 weeks ago by zicheng.hu • 20 • updated 15 days ago by williamgeorge51547 • 0
4
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1
answer
102
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1
answer
Convert Normalized RNA-Seq counts to TPM after Batch Correction
limma sva deseq2 written 18 days ago by rrcutler • 50
2
votes
1
answer
75
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1
answer
Processing agilent data by limma
limma agilent microarrays written 18 days ago by Agaz Hussain Wani • 260 • updated 18 days ago by Gordon Smyth ♦ 33k
2
votes
2
answers
90
views
2
answers
One-way hypothesis test in limma
limma written 21 days ago by s1437643 • 0 • updated 21 days ago by Gordon Smyth ♦ 33k
4
votes
3
answers
81
views
3
answers
sample size determination in microarrays studies with limma analysis
limma statistical power sample size microarrays written 22 days ago by eleonoregravier • 40
6
votes
2
answers
152
views
2
answers
Difficulty in finding DEG using TCGA data from FireBrowse
limma tcga deg firebrowse written 22 days ago by lawarde.ankita1 • 20 • updated 21 days ago by svlachavas • 570
1
vote
2
answers
80
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2
answers
limma package - error code about F-statistics not found in fit
limma written 24 days ago by jonellevillar • 0
4
votes
1
answer
115
views
1
answer
cameraPR vs geneSetTest and ROAST/CAMERA in general
limma gene set analysis voomwithqualityweights written 24 days ago by BharathAnanth • 10 • updated 24 days ago by Aaron Lun • 19k
0
votes
1
answer
121
views
1
answer
limma - Multi-level Experiments - time course data
limma deg rnaseq_analysis limma voom written 28 days ago by SPbeginner • 0 • updated 28 days ago by Aaron Lun • 19k
0
votes
1
answer
146
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1
answer
Limma : time course experiment with missing data
limma limma-voom written 5 weeks ago by SPbeginner • 0
0
votes
1
answer
83
views
1
answer
mean and SD in output of Limma for differential-gene-expression
limma mean sd written 5 weeks ago by mheydarpour • 10 • updated 5 weeks ago by Aaron Lun • 19k
2
votes
2
answers
78
views
2
answers
How is the best way to construct the model.matrix and the lmfit comparing longitudinal data?
limma limma paired analysis longitudinal data written 5 weeks ago by leticia.n.spindola • 0
1
vote
1
answer
53
views
1
answer
Agilent Data Normalization Result
limma arrayexpress agilent written 5 weeks ago by trandiemnghi • 0 • updated 5 weeks ago by Gordon Smyth ♦ 33k
2
votes
1
answer
81
views
1
answer
Complicated unbalanced block DOE with partially paired samples and analysis
limma complex-design paired design written 5 weeks ago by ML18 • 0 • updated 5 weeks ago by Aaron Lun • 19k
0
votes
2
answers
288
views
2
answers
Filtering genes based on Agilent flags
limma agilent microarrays written 10.9 years ago by Mcmahon, Wyatt • 50 • updated 5 weeks ago by Gordon Smyth ♦ 33k
2
votes
1
answer
171
views
1
answer
Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent written 5 weeks ago by CantExitVIM • 0
1
vote
1
answer
99
views
1
answer
Limma-voom with external observation weights
limma limma-voom written 5 weeks ago by Peter Langfelder • 1.4k • updated 5 weeks ago by Gordon Smyth ♦ 33k
3
votes
1
answer
117
views
1
answer
Difficulties with probable batch effect in paired blocked (treatment and placebo) experiment
limma edger deseq2 batch effect paired design written 6 weeks ago by Vladimir Krasikov • 90
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