0
votes
1
answer
75
views
1
answer
Count filter for differential expression
limma edger counts written 1 day ago by kaur0 • updated 9 hours ago by Gordon Smyth35k
2
votes
1
answer
108
views
1
answer
0
votes
1
answer
94
views
1
answer
0
votes
1
answer
57
views
1
answer
Setting up the design for paired analysis
limma edger paired design written 7 days ago by candida.vaz30 • updated 6 days ago by James W. MacDonald48k
4
votes
2
answers
93
views
2
answers
Interpreting mroast results
limma roast mroast written 10 days ago by SB0
2
votes
1
answer
96
views
1
answer
Inconsistent result between limma/voom and DESeq2
rnaseq limma deseq2 voom limma-voom written 11 days ago by bharata180320 • updated 11 days ago by Gordon Smyth35k
0
votes
2
answers
90
views
2
answers
RNA-seq analysis using R
rnaseq limma convert R written 12 days ago by justinkablan2250 • updated 11 days ago by Gordon Smyth35k
3
votes
1
answer
66
views
1
answer
Limma Voom duplicateCorrelation Design
limma duplicatecorrelation voom written 13 days ago by bruce.moran20 • updated 13 days ago by Aaron Lun21k
5
votes
2
answers
166
views
2
answers
edgeR paired samples with blocking
limma edger paired samples blocking written 18 days ago by anou0 • updated 14 days ago by Gordon Smyth35k
2
votes
1
answer
97
views
1
answer
0
votes
1
answer
79
views
1
answer
1
vote
1
answer
68
views
1
answer
batch effect - Limma package
limma written 4 weeks ago by dressa_ol0 • updated 4 weeks ago by James W. MacDonald48k
0
votes
1
answer
91
views
1
answer
RNAseq gene expression analysis in Personalized genomics
limma edger deseq2 tcga written 5 weeks ago by bioc.vkas0 • updated 5 weeks ago by Michael Love20k
0
votes
1
answer
106
views
1
answer
Creating a design matrix
limma design matrix written 3 months ago by mahm20 • updated 5 weeks ago by Gordon Smyth35k
0
votes
2
answers
111
views
2
answers
limma and intercept
limma intercept written 5 weeks ago by Nicolas Servant230
1
vote
2
answers
76
views
2
answers
3
votes
2
answers
81
views
2
answers
Is it ok to use decideTests on linearly dependent contrasts?
limma decidetests written 6 weeks ago by Ryan C. Thompson7.0k • updated 6 weeks ago by Gordon Smyth35k
0
votes
1
answer
137
views
1
answer
0
votes
1
answer
121
views
1
answer
Any difference between v$E and cpm(keep,log=TRUE)
limma written 7 weeks ago by Raymond0 • updated 7 weeks ago by Gordon Smyth35k
2
votes
2
answers
112
views
2
answers
Queries related to limma package based analysis of masspectrometry data
limma written 7 weeks ago by manubhaikp10 • updated 7 weeks ago by Gordon Smyth35k
4
votes
1
answer
94
views
1
answer
limma barcodeplot(): calculation of enrichment score
limma gene set enrichment analysis written 7 weeks ago by khandarius20 • updated 7 weeks ago by Aaron Lun21k
1
vote
1
answer
95
views
1
answer
1
vote
1
answer
130
views
1
answer
0
votes
2
answers
170
views
2
answers
Limma Volcano Plot Highlight Top Genes by Color
microarray limma volcanoplot color written 8 weeks ago by dmm2040 • updated 8 weeks ago by Gordon Smyth35k
0
votes
0
answers
56
views
0
answers
Sva for tumor cellular heterogeneity
limma sva written 8 weeks ago by chp9500
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