0
votes
1
answer
25
views
1
answer
how to apply correctly geneSetTest on deseq2 data results
limma deseq2 written 9 hours ago by jarod_v6@libero.it20 • updated 9 hours ago by Michael Love12k
7
votes
2
answers
103
views
2
answers
0
votes
3
answers
58
views
3
answers
Identification of DEGs through limma analysis
microarray limma p values lfc degs written 1 day ago by rkp0 • updated 22 hours ago by Gordon Smyth30k
0
votes
1
answer
72
views
1
answer
limma regularization on Ballgown
limma ballgown written 21 days ago by rodri20060 • updated 7 days ago by Alyssa Frazee110
0
votes
1
answer
45
views
1
answer
4
votes
1
answer
66
views
1
answer
Limma is doing the right way to calculate the fold change?
proteomics limma written 10 days ago by Bioinformatics20 • updated 10 days ago by Laurent Gatto810
2
votes
1
answer
63
views
1
answer
2
votes
2
answers
90
views
2
answers
Trouble with DESeq2, edgeR, and limma not accepting zeros in input
limma edger deseq2 written 13 days ago by Kaustav0 • updated 13 days ago by Gordon Smyth30k
0
votes
1
answer
54
views
1
answer
LIMMA 2x2 with time
limma limma design matrix written 14 days ago by Ahdee30 • updated 13 days ago by James W. MacDonald43k
1
vote
1
answer
91
views
1
answer
unable to update packages: foreign, Matrix
limma design and contrast matrix written 14 days ago by Bioinformatics20 • updated 14 days ago by James W. MacDonald43k
6
votes
1
answer
88
views
1
answer
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 14 days ago by wd10 • updated 14 days ago by Aaron Lun15k
0
votes
1
answer
916
views
1
answer
Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data
limma written 5.6 years ago by Avinash S40 • updated 15 days ago by Gordon Smyth30k
2
votes
1
answer
83
views
1
answer
Limma Model Design
microarray limma methylation written 17 days ago by Sarah Nesbitt0 • updated 17 days ago by Aaron Lun15k
2
votes
1
answer
81
views
1
answer
Limma toptable interpretation check
microarray limma fdr results p-value written 23 days ago by bhgyu0 • updated 23 days ago by Aaron Lun15k
0
votes
0
answers
64
views
0
answers
4
votes
2
answers
137
views
2
answers
Alternative packages to limma for analysis of microarray datasets
microarray limma deg written 5 weeks ago by Maximilian10 • updated 4 weeks ago by Bernd Klaus430
0
votes
1
answer
82
views
1
answer
bug limma / illuminaio? Otherwise small feature request...
limma illuminaio idat gzip written 4 weeks ago by Guido Hooiveld2.1k • updated 4 weeks ago by Matthew Ritchie630
0
votes
0
answers
61
views
0
answers
3
votes
2
answers
105
views
2
answers
limma for Paired Samples vs. lme
limma linear model paired samples written 5 weeks ago by wewolski10 • updated 5 weeks ago by Aaron Lun15k
2
votes
1
answer
90
views
1
answer
Limma filtering based on treatment group
limma filtering written 5 weeks ago by jamie.gearing0 • updated 5 weeks ago by Steve Lianoglou12k
0
votes
4
answers
247
views
4
answers
0
votes
1
answer
100
views
1
answer
12
votes
1
answer
169
views
1
answer
Testing for DE genes
limma differential gene expression affymetrix microarrays written 5 weeks ago by Lennart.Vermander10 • updated 5 weeks ago by Aaron Lun15k
0
votes
0
answers
103
views
0
answers
Agilent data normalization
limma written 5 weeks ago by mona.salehinasab0
2
votes
1
answer
115
views
1
answer
Limma: difference between groups of paired data
limma limma paired analysis written 6 weeks ago by johnmcma0 • updated 6 weeks ago by Aaron Lun15k
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