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Time course experiment using limma with voom
limma voom rna seq time-course experiments written 1 hour ago by mahes.muniandy • 0 • updated 1 hour ago by Gordon Smyth ♦ 37k
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limma technical replicates and biological replicates in same design
limma santa written 9.7 years ago by Gordon Smyth ♦ 37k
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limma technical replicates and biological replicates in the same design
limma santa written 9.7 years ago by Marcelo Laia • 430 • updated 1 day ago by Gordon Smyth ♦ 37k
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How to find out the genes that changes in expression by using gene level expression data matrix?
microarray affy limma edger written 2 days ago by Jurat Shahidin • 60
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Small differences in limma with and without contrast matrix
limma written 3 days ago by Jake • 60 • updated 3 days ago by Aaron Lun • 24k
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How should I compare two different RNA-seq datasets using DESeq2 or EgdeR?
limma deseq2 combat written 6 days ago by joseale2310 • 10 • updated 6 days ago by Michael Love ♦ 24k
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cross-array comparison using limma fitted values
limma written 7 days ago by capricygcapricyg • 0 • updated 7 days ago by Aaron Lun • 24k
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voomWithQualityWeights together with covariate in design matrix
limma voom rna-seq voomwithqualityweights written 11 days ago by Julien Roux • 90 • updated 10 days ago by Matthew Ritchie • 750
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Test genes expressed ( not just expressed higher ) in one or two group
limma edger written 12 days ago by heyao • 30 • updated 12 days ago by Gordon Smyth ♦ 37k
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single cell data: adding random effects for subject with multilevel experiment design
limma scran simplesinglecell singlecellexperiment written 13 days ago by Matt Mulé • 0 • updated 13 days ago by Aaron Lun • 24k
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Limma model design: is it better to just build a separate design for each specific comparison?
limma written 13 days ago by Ahdee • 40 • updated 13 days ago by James W. MacDonald ♦ 50k
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Sanity Checking Mixed Factorial Proteomics Analysis Workflow Using Limma
limma written 17 days ago by JMallory • 0 • updated 16 days ago by Gordon Smyth ♦ 37k
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FDR and mixed FDR in limma fry()
limma fdr written 16 days ago by Regeroka • 0 • updated 16 days ago by Gordon Smyth ♦ 37k
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logCPM to CPM conversion after removeBatchEffect()
limma edger cpm removebatcheffect logcpm written 18 days ago by altintas.ali • 0
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Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
proteomics limma written 24 days ago by JMallory • 0 • updated 19 days ago by LKal • 0
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How does normalisation affect the outcome of the Limma t-test like test (using the eBayes() function)?
limma written 22 days ago by Regeroka • 0 • updated 22 days ago by Gordon Smyth ♦ 37k
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Help with matrix design
limma written 22 days ago by ivan.vechetti • 0 • updated 22 days ago by Gordon Smyth ♦ 37k
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How does limma calculate the log2fc?
limma differential expression time-course analysis written 26 days ago by mcfarn1 • 0 • updated 26 days ago by Gordon Smyth ♦ 37k
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Phyloseq to metagenomeSeq
limma metagenomeseq written 26 days ago by nabiyogesh • 0
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Why does limma voom E value give different result than the voom object
limma voom rna-seq written 4 weeks ago by Ahdee • 40 • updated 4 weeks ago by thokall • 160
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random effects + interaction term + limma
limma rna-seq random effects interaction written 4 weeks ago by flippy23 • 0
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Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
limma edger written 4 weeks ago by anna.cot.anna.cot • 0 • updated 4 weeks ago by Gordon Smyth ♦ 37k
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84
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edgeR and batch effect correction for differential analysis
rnaseq batcheffect limma edger R written 4 weeks ago by madhu93 • 0 • updated 4 weeks ago by James W. MacDonald ♦ 50k
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Anova-like in Limma
limma written 5 weeks ago by ivan.vechetti • 0 • updated 5 weeks ago by Gordon Smyth ♦ 37k
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design matrix and correlate variable
limma lmfit written 5 weeks ago by mouton.alice • 10 • updated 5 weeks ago by Aaron Lun • 24k
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