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Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
Hervé Pagès
16k
Available since last Friday. See https://bioconductor.org/packages/3.17/DelayedArray
Comment: Diffbind "No genome detected"
by
James W. MacDonald
63k
The error you see comes from an internal function called `pv.genome` that inspects the header of your BAM file and tries to infer the genom…
Comment: Diffbind "No genome detected"
by
kyliecode
•
0
Hi James,
Thanks for your reply!
For the blacklist, I just used the one provided by DiffBind, which is "DBA_BLACKLIST_MM10".
For the grey…
Answer: DESeq2 on multilevel design variable
by
ATpoint
★
2.9k
You can make your life simply and use a contrast for each, for example:
```r
library(DESeq2)
dds <- makeExampleDESeqDataSet()
diagnosis <…
Answer: Diffbind "No genome detected"
by
James W. MacDonald
63k
You can specify the greylist in the same manner as the blacklist, which should fix your problem.
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kyliecode
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Mike Smith
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