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Recent ...
Replies
Comment: Ensembl site unresponsive
by
tommaso.gastaldi
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0
Hi, I have the same problem and used your suggestion:
ensembl <- useMart("https://dec2016.archive.ensembl.org", dataset="mmusculus_gen…
Comment: DESeq2 unmix function
by
Sam
▴
10
I understand the general scenario to be the following : I should have expression from a mixture of cell sub-types A,B,C. Also, I should hav…
Comment: clusterProfiler merge_result dotplot
by
jodi.thomas
•
0
Did you find a solution for this? I've also run into the exact same problem using merge_result on two gseaResult objects.
Answer: Pipeline for an Anova-like analysis in edgeR
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Gordon Smyth
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The edgeR QL workflow illustrates a full pipeline:
https://www.bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/i…
Comment: unable to forge custom BSgenome after update
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Hervé Pagès
14k
From the updated vignette (unrendered):
> If the assembly or genome has no circular sequence, set \code{circ\_seqs} to \code{character(0)}…
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