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Comment: interpretation complex design limma
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dfrtyu
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Very many thanks for the reply! @ James MacDonald
Indeed it is probably unnecessary to do ```g2v1=(group2_dead+group2_alive)``` hence t…
Answer: Design formula in DESeq2
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swbarnes2
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if sex is, like batch, just a 'nuisance' actor that you aren't really going to interrogate, but just want to include as a co-factor to be a…
Answer: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
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Mike Smith
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This requires some refinement, but how about modifying the `knitr::knit_hooks` for "warnings" to search each warning for known patterns and…
Answer: readIDAT output to beadarray package input file
by
James W. MacDonald
58k
There's a [whole vignette about using beadarray to analyze at the bead level][1]. You might start there.
[1]: http://www.bioconducto…
Answer: interpretation complex design limma
by
James W. MacDonald
58k
When you fit a linear model and make comparisons you are always computing the average for a group, and you make comparisons by calculating …
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