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ERROR : installation of package ‘org.Hs.eg.db’ had non-zero exit status
BSgenome.Ggallus.UCSC.galGal6
1 hour ago
Reuben
• 0
0
votes
0
replies
8
views
ASpli error message
ASpli
3 hours ago
stephen66
▴ 40
0
votes
0
replies
10
views
PATHVIEW incorrect values being plotted in output
pathview
org.Hs.eg.db
6 hours ago
Rodrigo
• 0
0
votes
3
replies
78
views
GenomeInfoDb’ could not be loaded or installed
GenomeInfoDbData
3 days ago • updated 10 hours ago
ettore64
• 0
0
votes
2
replies
45
views
bioconductor.org not reachable from EU region
error
http429
server
updated 9 hours ago by
shepherl
2.6k • written 12 hours ago by
ashu.upadhyay2206
• 0
1
vote
6
replies
82
views
The correlation between normalized counts and TPM based on 2-factor analysis by DESeq2
DESeq2
RNASeq
15 hours ago • updated 10 hours ago
hequn
• 0
0
votes
8
replies
59
views
DESeq2 coefficient names
resultsNames
DESeq2
coefficient
18 hours ago • updated 30 minutes ago
jkhudyakov
• 0
2
votes
3
replies
29
views
Ensemble site connection error
biomaRt
updated 40 minutes ago by
Kevin Blighe
2.8k • written 22 hours ago by
Makoto
▴ 10
0
votes
3
replies
54
views
Deseq2 - removing batch effect
BatchEffect
DESeq2
updated 4 hours ago by
Kevin Blighe
2.8k • written 19 hours ago by
vinisha
• 0
0
votes
0
replies
16
views
EdgeR glmLRT vs glmQLFTest
edgeR
DifferentialExpression
15 hours ago
Marianna
• 0
1
vote
4
replies
1.2k
views
NA values of count matrix in class DESeqDataSet
rna-seq
recount
updated 1 day ago by
Leonardo Collado Torres
▴ 870 • written 3.6 years ago by
maleknias
• 0
0
votes
1
reply
67
views
News:
Bioconductor 3.13 New Package Submission Deadline
release
Submission
newpackage
Release
Deadline
9 days ago • updated 1 day ago
shepherl
2.6k
0
votes
0
replies
32
views
DiffBind
ATACSeq
DiFFBind
1 day ago
Riba Michela
▴ 80
2
votes
3
replies
96
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
updated 1 day ago by
Gordon Smyth
42k • written 2 days ago by
Antonio M.
• 0
0
votes
3
replies
154
views
Error: package or namespace load failed for ‘org.Hs.eg.db’:
$operator
atomicvectors
updated 6 hours ago by
Riba Michela
▴ 80 • written 5 days ago by
dazhiruoyujingjie
• 0
1
vote
2
replies
62
views
DESeq2 for TRAP-seq methods
DESeq2
TRAP-seq
3 days ago • updated 2 days ago
marypiper
• 0
3
votes
3
replies
94
views
DESeq2 unmix function
DESeq2
updated 14 hours ago by
Michael Love
32k • written 2 days ago by
Sam
▴ 10
1
vote
3
replies
93
views
Mapping EntrezId to Ensembl IDs returns NA for pseudogenes and snoRNA
RNASeqData
RNASeq
RNASeqR
2 days ago
dantasezequiel1
• 0
0
votes
0
replies
25
views
Job:
Bioinformatician / Software Developer with Flow Cytometry experience.
JobPosting
Flow-Cytometry
2 days ago
Martin
• 0
1
vote
3
replies
63
views
Sorting columns in pheatmap
pheatmap
updated 3 hours ago by
Chris Seidel
▴ 80 • written 2 days ago by
Linda
• 0
0
votes
6
replies
1.0k
views
clusterProfiler: different runs return different results for gse functions
clusterprofiler
updated 2 days ago by
josep
• 0 • written 3.6 years ago by
ssv
• 0
0
votes
2
replies
55
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD
pcaMethods
MicroarrayData
Microarray
2 days ago
waiyin0923
• 0
3
votes
5
replies
93
views
unable to forge custom BSgenome after update
BSgenome
updated 2 days ago by
Hervé Pagès
14k • written 2 days ago by
Chris Seidel
▴ 80
0
votes
0
replies
24
views
Mass spec intensity difference
xcms
2 days ago
Phytochem
• 0
0
votes
0
replies
28
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
3 days ago
Thomas.H.Hampton
• 0
0
votes
1
reply
43
views
Extract data from pair files
nimblegen
pair
updated 3 days ago by
James W. MacDonald
56k • written 3 days ago by
Dhanya
• 0
0
votes
0
replies
33
views
News:
Support Site Bioconductor Award
recognition
awards
bioc2021
Bioconductor
3 days ago
shepherl
2.6k
2
votes
3
replies
83
views
Which DESeq normalization method?
DESeq2
updated 3 days ago by
Michael Love
32k • written 3 days ago by
save
• 0
0
votes
2
replies
67
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3 days ago by
shepherl
2.6k • written 5 days ago by
wewolski
▴ 10
3
votes
5
replies
119
views
Failed to load "org.Mm.eg.db" package
org.Mm.eg.db
7 days ago • updated 1 hour ago
Nicol
• 0
4
votes
4
replies
150
views
How to apply limma-trend or voom to batch corrected single cell data? (non-integer and negative values included)
MNNCorrect
scMerge
limma-trend
6 days ago • updated 3 days ago
hainct
• 0
0
votes
1
reply
67
views
Correcting partially penetrant batch effect
DESeq2
updated 4 days ago by
Michael Love
32k • written 5 days ago by
swbarnes2
▴ 680
2
votes
1
reply
69
views
tximeta Error in UseMethod("filter_")
tximeta
updated 4 days ago by
Michael Love
32k • written 4 days ago by
Pufall, Miles A
▴ 30
4
votes
2
replies
123
views
Error Loading "org.Dm.eg.db" package
r
org.Dm.eg.db
updated 4 days ago by
Chris Seidel
▴ 80 • written 4 days ago by
Amanda
▴ 20
3
votes
2
replies
66
views
Complex Heatmap shows just one color
Heatmap
ComplexHeatmap
colorRamp
4 days ago
Assa Yeroslaviz
★ 1.5k
40
votes
29
replies
3.2k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db
pathview
updated 2 days ago by
Kevin Ushey
▴ 110 • written 10 days ago by
Arun
▴ 150
0
votes
0
replies
36
views
PCA theoretical question for applied case
pcaMethods
4 days ago
Gero
• 0
2
votes
2
replies
312
views
Error: package or namespace load failed for ‘org.Mm.eg.db':
org.Mm.eg.db
5 days ago
Jack
• 0
0
votes
0
replies
37
views
motifBreakR error with custom BSgenome
GenomeInfoDb
motifbreakR
5 days ago • updated 1 day ago
Chris Seidel
▴ 80
1
vote
11
replies
252
views
Aspli: error with gbCounts
Aspli
ASpli
4 weeks ago • updated 2 days ago
jbono
▴ 10
1
vote
1
reply
55
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 6 days ago by
Michael Love
32k • written 7 days ago by
l.troxler
▴ 10
1
vote
8
replies
155
views
DESeq problems
help
DESeq2
DESeqDataSetFromMatrix
rownames
updated 4 days ago by
Kevin Blighe
2.8k • written 7 days ago by
dorina.jamniczky
• 0
0
votes
9
replies
617
views
Thoughts on computer purchase
computer
updated 6 days ago by
Gordon Smyth
42k • written 15.0 years ago by
Lance Palmer
▴ 60
2
votes
2
replies
95
views
Error following instructions of CBioportal R-workshop example 2
MultiAssayExperiment
cBioPortalData
updated 4 days ago by
Kevin Blighe
2.8k • written 7 days ago by
Javier
• 0
0
votes
1
reply
33
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 6 days ago by
Anaysha
• 0 • written 6 days ago by
cviner
• 0
0
votes
6
replies
125
views
Sample quality weights for RNA-seq
DESeq2
limma
weight
7 days ago • updated 5 days ago
Naomi Altman
★ 6.0k
1
vote
2
replies
159
views
CUT&Tag differential peak analysis using Diffbind, with pre-calculated normalization factor.
DiffBind
17 days ago • updated 3 days ago
mwong043
• 0
1
vote
2
replies
65
views
Warning with the example of GSEA
fgsea
fgse
updated 7 days ago by
Kevin Blighe
2.8k • written 7 days ago by
julie.hardy
• 0
3
votes
2
replies
50
views
Biomart Errors
biomaRt
7 days ago
Dr. Connie Brett
▴ 10
0
votes
2
replies
97
views
DepMap copy number
software error
depmap
updated 4 days ago by
E
• 0 • written 6 months ago by
DannyM
• 0
40,595 results • Page
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Comment: DESeq2 coefficient names
by
jkhudyakov
• 0
Ahh that's right, I used helmert contrasts for a different project and didn't realize it changed it in the .Rprofile. I set it back to defa…
Comment: Ensemble site connection error
by
Kevin Blighe
2.8k
No problem, Makoto, and your question was no problem at all. Thank you for using Bioconductor.
Comment: Ensemble site connection error
by
Makoto
▴ 10
Hi Kevin, Thank you for your quick and polite response. I'm quite new in bioinformatics, so sorry to ask such a basic question. I could su…
Comment: Failed to load "org.Mm.eg.db" package
by
Nicol
• 0
Thank you @lshep! Those threads were really helpful
Comment: Sorting columns in pheatmap
by
Chris Seidel
▴ 80
Just to be clear Linda, the heat map is not deciding which genes to show. You're giving it a table of numbers, and it's simply displaying t…
Votes
Comment: Ensemble site connection error
Answer: Ensemble site connection error
Answer: Failed to load "org.Mm.eg.db" package
Answer: Failed to load "org.Mm.eg.db" package
Comment: Sorting columns in pheatmap
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