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Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
by
Michael Love
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"...reads are counted for whole genomes instead of individual genes"
Oh I see. I didn't catch that. You may have no problem then with the …
Comment: TargetsFile. Where it is?
by
Basti
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Hi, I think for this dataset you will have to create the targets file yourself. The information you need is contained in the series matrix …
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Not using default Bioconductor repositories since simplifyEnrichment was only added to Bioconductor release 3.12; The package would not be …
Comment: Using DESeq2 to identify changing transcriptional activity in a metagenome
by
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Thank you for your answer and especially for pointing me into the direction of zinbwave and the issue of zero inflation.
I will look into …
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