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0
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0
answers
101
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0
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[metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormStatFast
metagenomeseq error cumnormstatfast features written 4 months ago by jol.espinoz • 10
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0
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181
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Paired Difference Analysis
metagenomeseq written 7 months ago by nhua • 0
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2
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149
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2
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Filter low counts OTUs from a MRfull table to prepare a heatmap
metagenomeseq written 7 months ago by arguello.rguez • 0
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vote
1
answer
182
views
1
answer
Including taxa names in heatmap in metagenomeseq
metagenomeseq heatmap gut microbiome written 8 months ago by arguello.rguez • 0 • updated 8 months ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
143
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1
answer
metagenomeSeq pre-analysis Data Preporation for full genome sequencing
metagenomeseq full genome sequencing written 8 months ago by cmapoulton • 0 • updated 8 months ago by Hector Corrada Bravo • 60
1
vote
1
answer
261
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1
answer
Should I normalize communities separately with metagenomeseq?
microbiome metagenomics metagenomeseq gut microbiome shotgun metagenomics written 10 months ago by lilianeconteville • 10 • updated 10 months ago by Joseph Nathaniel Paulson • 270
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2
answers
253
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2
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How do you show/export color scale of a heatmap generated by plotMRheatmap of metagenomeSeq?
metagenomeseq color key plotmrheatmap written 15 months ago by chawonhe • 0
2
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3
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845
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3
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Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq written 18 months ago by sasha • 0
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1
answer
288
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1
answer
metagenomeSeq: role for fitLogNormal?
metagenomeseq written 18 months ago by handibles • 10 • updated 18 months ago by Joseph Nathaniel Paulson • 270
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votes
1
answer
241
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1
answer
metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
metagenomeseq written 18 months ago by handibles • 10 • updated 18 months ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
337
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1
answer
Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap written 18 months ago by Key • 0 • updated 18 months ago by James W. MacDonald ♦ 47k
0
votes
1
answer
404
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1
answer
metagenomeSeq log transformation
metagenomeseq logtransformation written 20 months ago by PJ • 0 • updated 20 months ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
379
views
1
answer
MetagenomeSeq: Sorting by sample type in plotMRheatmap
metagenomeseq plotmrheatmap written 20 months ago by Rachael • 0 • updated 20 months ago by Joseph Nathaniel Paulson • 270
0
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0
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315
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0
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MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 21 months ago by marypadilha • 0
0
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2
answers
393
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2
answers
metagenomeSeq: cumNormStat normalization default
microbiome metagenomeseq written 22 months ago by Brian Smith • 120
1
vote
3
answers
335
views
3
answers
error using fitTimeSeries in metagenomeSeq
metagenomeseq fittimeseries written 23 months ago by wijera81 • 0 • updated 23 months ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
292
views
1
answer
Understand fold changes
metagenomeseq written 24 months ago by David • 860 • updated 24 months ago by Joseph Nathaniel Paulson • 270
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3
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664
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3
answers
paired analysis using metagenomeSeq
metagenomeseq logfc standard error paired samples written 2.0 years ago by manasishah86 • 30 • updated 2.0 years ago by mariamake0011 • 0
0
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2
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982
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2
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DESeq2 16s microbiome size factors
rnaseq microbiome deseq2 metagenomeseq 16s written 2.1 years ago by jbatsx • 0 • updated 2.1 years ago by Joseph Nathaniel Paulson • 270
2
votes
1
answer
440
views
1
answer
Metagenome seq errors using biom (1.3) file
metagenomeseq qiime biom written 2.1 years ago by dr.richrodrigues • 0 • updated 2.1 years ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
238
views
1
answer
fitTimeSeries possible error
metagenomeseq fittimeseries written 2.1 years ago by giulia.masetti • 0 • updated 2.1 years ago by Joseph Nathaniel Paulson • 270
1
vote
2
answers
350
views
2
answers
metagenomeSeq for continuous phenotype
limma metagenomeseq continuous written 2.2 years ago by pjgalli2 • 0
0
votes
1
answer
285
views
1
answer
fitZig coefficient for interaction terms?
metagenomeseq written 2.3 years ago by nhuda6 • 0 • updated 2.3 years ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
284
views
1
answer
Aggregate By Taxonomy Error
metagenomeseq written 2.3 years ago by nhuda6 • 0 • updated 2.3 years ago by Joseph Nathaniel Paulson • 270
0
votes
3
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508
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3
answers
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomics metagenomeseq anova written 2.4 years ago by David • 860
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