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0
votes
2
answers
64
views
2
answers
How do you show/export color scale of a heatmap generated by plotMRheatmap of metagenomeSeq?
metagenomeseq color key plotmrheatmap written 8 weeks ago by chawonhe • 0
2
votes
3
answers
294
views
3
answers
Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq written 5 months ago by sasha • 0
0
votes
1
answer
144
views
1
answer
metagenomeSeq: role for fitLogNormal?
metagenomeseq written 4 months ago by handibles • 10 • updated 4 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
92
views
1
answer
metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
metagenomeseq written 4 months ago by handibles • 10 • updated 4 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
159
views
1
answer
Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap written 5 months ago by Key • 0 • updated 5 months ago by James W. MacDonald ♦ 44k
0
votes
1
answer
229
views
1
answer
metagenomeSeq log transformation
metagenomeseq logtransformation written 7 months ago by PJ • 0 • updated 7 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
178
views
1
answer
MetagenomeSeq: Sorting by sample type in plotMRheatmap
metagenomeseq plotmrheatmap written 7 months ago by Rachael • 0 • updated 7 months ago by Joseph Nathaniel Paulson • 260
0
votes
0
answers
196
views
0
answers
MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 8 months ago by marypadilha • 0
0
votes
2
answers
212
views
2
answers
metagenomeSeq: cumNormStat normalization default
microbiome metagenomeseq written 8 months ago by Brian Smith • 70
1
vote
3
answers
190
views
3
answers
error using fitTimeSeries in metagenomeSeq
metagenomeseq fittimeseries written 10 months ago by wijera81 • 0 • updated 10 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
177
views
1
answer
Understand fold changes
metagenomeseq written 10 months ago by David • 860 • updated 10 months ago by Joseph Nathaniel Paulson • 260
0
votes
3
answers
341
views
3
answers
paired analysis using metagenomeSeq
metagenomeseq logfc standard error paired samples written 11 months ago by manasishah86 • 20 • updated 11 months ago by mariamake0011 • 0
0
votes
2
answers
519
views
2
answers
DESeq2 16s microbiome size factors
rnaseq microbiome deseq2 metagenomeseq 16s written 11 months ago by jbatsx • 0 • updated 11 months ago by Joseph Nathaniel Paulson • 260
2
votes
1
answer
230
views
1
answer
Metagenome seq errors using biom (1.3) file
metagenomeseq qiime biom written 12 months ago by dr.richrodrigues • 0 • updated 12 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
160
views
1
answer
fitTimeSeries possible error
metagenomeseq fittimeseries written 12 months ago by giulia.masetti • 0 • updated 12 months ago by Joseph Nathaniel Paulson • 260
1
vote
2
answers
216
views
2
answers
metagenomeSeq for continuous phenotype
limma metagenomeseq continuous written 13 months ago by pjgalli2 • 0
0
votes
1
answer
201
views
1
answer
fitZig coefficient for interaction terms?
metagenomeseq written 15 months ago by nhuda6 • 0 • updated 14 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
193
views
1
answer
Aggregate By Taxonomy Error
metagenomeseq written 15 months ago by nhuda6 • 0 • updated 14 months ago by Joseph Nathaniel Paulson • 260
0
votes
3
answers
333
views
3
answers
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomics metagenomeseq anova written 15 months ago by David • 860
0
votes
1
answer
320
views
1
answer
Normalisation problem in metagenomeSeq
normalization metagenomeseq written 16 months ago by Stephen Rolfe • 20 • updated 16 months ago by Joseph Nathaniel Paulson • 260
1
vote
1
answer
329
views
1
answer
Multiple variables in fitFeaturemodel
metagenomeseq written 17 months ago by sajancr • 0 • updated 17 months ago by Joseph Nathaniel Paulson • 260
0
votes
0
answers
367
views
0
answers
Dramatically different results from comparing multiple groups using fitZig versus fitFeatureModel
metagenomeseq written 18 months ago by craemuletz • 0
0
votes
0
answers
274
views
0
answers
Differential abundance for elevational gradient survey -- use fitTimeSeries?
metagenomeseq written 18 months ago by craemuletz • 0
3
votes
1
answer
566
views
1
answer
Interpretation for MRfulltable of fitzig in Metagenomeseq
metagenomeseq fitzig mrfulltable written 18 months ago by Han-Na Kim • 0 • updated 18 months ago by Joseph Nathaniel Paulson • 260
0
votes
3
answers
639
views
3
answers
Alpha diversity on Rlogtransformed data
phyloseq deseq2 metagenomeseq written 20 months ago by David • 860
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