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34
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[metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormStatFast
metagenomeseq error cumnormstatfast features written 4 days ago by jol.espinoz • 10
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133
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Paired Difference Analysis
metagenomeseq written 3 months ago by nhua • 0
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2
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106
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2
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Filter low counts OTUs from a MRfull table to prepare a heatmap
metagenomeseq written 3 months ago by arguello.rguez • 0
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1
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115
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1
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Including taxa names in heatmap in metagenomeseq
metagenomeseq heatmap gut microbiome written 3 months ago by arguello.rguez • 0 • updated 3 months ago by Joseph Nathaniel Paulson • 270
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1
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112
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1
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metagenomeSeq pre-analysis Data Preporation for full genome sequencing
metagenomeseq full genome sequencing written 4 months ago by cmapoulton • 0 • updated 4 months ago by Hector Corrada Bravo • 60
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1
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184
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1
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Should I normalize communities separately with metagenomeseq?
microbiome metagenomics metagenomeseq gut microbiome shotgun metagenomics written 6 months ago by lilianeconteville • 10 • updated 6 months ago by Joseph Nathaniel Paulson • 270
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2
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181
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How do you show/export color scale of a heatmap generated by plotMRheatmap of metagenomeSeq?
metagenomeseq color key plotmrheatmap written 10 months ago by chawonhe • 0
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3
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638
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3
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Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq written 14 months ago by sasha • 0
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1
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256
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1
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metagenomeSeq: role for fitLogNormal?
metagenomeseq written 13 months ago by handibles • 10 • updated 13 months ago by Joseph Nathaniel Paulson • 270
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1
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207
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metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
metagenomeseq written 13 months ago by handibles • 10 • updated 13 months ago by Joseph Nathaniel Paulson • 270
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1
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299
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Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap written 14 months ago by Key • 0 • updated 14 months ago by James W. MacDonald ♦ 46k
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1
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358
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1
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metagenomeSeq log transformation
metagenomeseq logtransformation written 16 months ago by PJ • 0 • updated 16 months ago by Joseph Nathaniel Paulson • 270
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1
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329
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1
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MetagenomeSeq: Sorting by sample type in plotMRheatmap
metagenomeseq plotmrheatmap written 16 months ago by Rachael • 0 • updated 16 months ago by Joseph Nathaniel Paulson • 270
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288
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MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 17 months ago by marypadilha • 0
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2
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353
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2
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metagenomeSeq: cumNormStat normalization default
microbiome metagenomeseq written 18 months ago by Brian Smith • 110
1
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3
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282
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3
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error using fitTimeSeries in metagenomeSeq
metagenomeseq fittimeseries written 19 months ago by wijera81 • 0 • updated 19 months ago by Joseph Nathaniel Paulson • 270
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1
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269
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1
answer
Understand fold changes
metagenomeseq written 19 months ago by David • 860 • updated 19 months ago by Joseph Nathaniel Paulson • 270
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3
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573
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3
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paired analysis using metagenomeSeq
metagenomeseq logfc standard error paired samples written 20 months ago by manasishah86 • 30 • updated 20 months ago by mariamake0011 • 0
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2
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845
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DESeq2 16s microbiome size factors
rnaseq microbiome deseq2 metagenomeseq 16s written 20 months ago by jbatsx • 0 • updated 20 months ago by Joseph Nathaniel Paulson • 270
2
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1
answer
373
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1
answer
Metagenome seq errors using biom (1.3) file
metagenomeseq qiime biom written 21 months ago by dr.richrodrigues • 0 • updated 21 months ago by Joseph Nathaniel Paulson • 270
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1
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222
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1
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fitTimeSeries possible error
metagenomeseq fittimeseries written 21 months ago by giulia.masetti • 0 • updated 21 months ago by Joseph Nathaniel Paulson • 270
1
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2
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319
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2
answers
metagenomeSeq for continuous phenotype
limma metagenomeseq continuous written 22 months ago by pjgalli2 • 0
0
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1
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263
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1
answer
fitZig coefficient for interaction terms?
metagenomeseq written 24 months ago by nhuda6 • 0 • updated 24 months ago by Joseph Nathaniel Paulson • 270
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1
answer
257
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1
answer
Aggregate By Taxonomy Error
metagenomeseq written 24 months ago by nhuda6 • 0 • updated 24 months ago by Joseph Nathaniel Paulson • 270
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3
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450
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3
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MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomics metagenomeseq anova written 2.0 years ago by David • 860
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