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0
votes
2
answers
90
views
2
answers
How do you show/export color scale of a heatmap generated by plotMRheatmap of metagenomeSeq?
metagenomeseq color key plotmrheatmap written 3 months ago by chawonhe • 0
2
votes
3
answers
358
views
3
answers
Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq written 7 months ago by sasha • 0
0
votes
1
answer
168
views
1
answer
metagenomeSeq: role for fitLogNormal?
metagenomeseq written 6 months ago by handibles • 10 • updated 6 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
122
views
1
answer
metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
metagenomeseq written 6 months ago by handibles • 10 • updated 6 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
204
views
1
answer
Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap written 7 months ago by Key • 0 • updated 7 months ago by James W. MacDonald ♦ 44k
0
votes
1
answer
247
views
1
answer
metagenomeSeq log transformation
metagenomeseq logtransformation written 9 months ago by PJ • 0 • updated 9 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
204
views
1
answer
MetagenomeSeq: Sorting by sample type in plotMRheatmap
metagenomeseq plotmrheatmap written 9 months ago by Rachael • 0 • updated 9 months ago by Joseph Nathaniel Paulson • 260
0
votes
0
answers
225
views
0
answers
MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 10 months ago by marypadilha • 0
0
votes
2
answers
243
views
2
answers
metagenomeSeq: cumNormStat normalization default
microbiome metagenomeseq written 10 months ago by Brian Smith • 90
1
vote
3
answers
201
views
3
answers
error using fitTimeSeries in metagenomeSeq
metagenomeseq fittimeseries written 12 months ago by wijera81 • 0 • updated 12 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
203
views
1
answer
Understand fold changes
metagenomeseq written 12 months ago by David • 860 • updated 12 months ago by Joseph Nathaniel Paulson • 260
0
votes
3
answers
392
views
3
answers
paired analysis using metagenomeSeq
metagenomeseq logfc standard error paired samples written 13 months ago by manasishah86 • 20 • updated 13 months ago by mariamake0011 • 0
0
votes
2
answers
598
views
2
answers
DESeq2 16s microbiome size factors
rnaseq microbiome deseq2 metagenomeseq 16s written 13 months ago by jbatsx • 0 • updated 13 months ago by Joseph Nathaniel Paulson • 260
2
votes
1
answer
257
views
1
answer
Metagenome seq errors using biom (1.3) file
metagenomeseq qiime biom written 14 months ago by dr.richrodrigues • 0 • updated 14 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
171
views
1
answer
fitTimeSeries possible error
metagenomeseq fittimeseries written 14 months ago by giulia.masetti • 0 • updated 14 months ago by Joseph Nathaniel Paulson • 260
1
vote
2
answers
240
views
2
answers
metagenomeSeq for continuous phenotype
limma metagenomeseq continuous written 15 months ago by pjgalli2 • 0
0
votes
1
answer
214
views
1
answer
fitZig coefficient for interaction terms?
metagenomeseq written 16 months ago by nhuda6 • 0 • updated 16 months ago by Joseph Nathaniel Paulson • 260
0
votes
1
answer
203
views
1
answer
Aggregate By Taxonomy Error
metagenomeseq written 16 months ago by nhuda6 • 0 • updated 16 months ago by Joseph Nathaniel Paulson • 260
0
votes
3
answers
365
views
3
answers
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomics metagenomeseq anova written 17 months ago by David • 860
0
votes
1
answer
351
views
1
answer
Normalisation problem in metagenomeSeq
normalization metagenomeseq written 18 months ago by Stephen Rolfe • 20 • updated 18 months ago by Joseph Nathaniel Paulson • 260
1
vote
1
answer
345
views
1
answer
Multiple variables in fitFeaturemodel
metagenomeseq written 19 months ago by sajancr • 0 • updated 19 months ago by Joseph Nathaniel Paulson • 260
0
votes
0
answers
390
views
0
answers
Dramatically different results from comparing multiple groups using fitZig versus fitFeatureModel
metagenomeseq written 20 months ago by craemuletz • 0
0
votes
0
answers
295
views
0
answers
Differential abundance for elevational gradient survey -- use fitTimeSeries?
metagenomeseq written 20 months ago by craemuletz • 0
3
votes
1
answer
627
views
1
answer
Interpretation for MRfulltable of fitzig in Metagenomeseq
metagenomeseq fitzig mrfulltable written 20 months ago by Han-Na Kim • 0 • updated 20 months ago by Joseph Nathaniel Paulson • 260
0
votes
3
answers
689
views
3
answers
Alpha diversity on Rlogtransformed data
phyloseq deseq2 metagenomeseq written 22 months ago by David • 860
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