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134
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[metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormStatFast
metagenomeseq error cumnormstatfast features written 6 months ago by jol.espinoz • 20
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0
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203
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Paired Difference Analysis
metagenomeseq written 9 months ago by nhua • 0
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2
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168
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2
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Filter low counts OTUs from a MRfull table to prepare a heatmap
metagenomeseq written 9 months ago by arguello.rguez • 0
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1
answer
206
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1
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Including taxa names in heatmap in metagenomeseq
metagenomeseq heatmap gut microbiome written 9 months ago by arguello.rguez • 0 • updated 9 months ago by Joseph Nathaniel Paulson • 270
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1
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176
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1
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metagenomeSeq pre-analysis Data Preporation for full genome sequencing
metagenomeseq full genome sequencing written 10 months ago by cmapoulton • 0 • updated 10 months ago by Hector Corrada Bravo • 60
1
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1
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296
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1
answer
Should I normalize communities separately with metagenomeseq?
microbiome metagenomics metagenomeseq gut microbiome shotgun metagenomics written 12 months ago by lilianeconteville • 10 • updated 12 months ago by Joseph Nathaniel Paulson • 270
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2
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287
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How do you show/export color scale of a heatmap generated by plotMRheatmap of metagenomeSeq?
metagenomeseq color key plotmrheatmap written 16 months ago by chawonhe • 0
2
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3
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981
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Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq written 20 months ago by sasha • 0
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1
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309
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1
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metagenomeSeq: role for fitLogNormal?
metagenomeseq written 19 months ago by handibles • 10 • updated 19 months ago by Joseph Nathaniel Paulson • 270
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1
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257
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1
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metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
metagenomeseq written 19 months ago by handibles • 10 • updated 19 months ago by Joseph Nathaniel Paulson • 270
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1
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363
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1
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Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap written 20 months ago by Key • 0 • updated 20 months ago by James W. MacDonald ♦ 48k
0
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1
answer
432
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1
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metagenomeSeq log transformation
metagenomeseq logtransformation written 22 months ago by PJ • 0 • updated 22 months ago by Joseph Nathaniel Paulson • 270
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1
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404
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1
answer
MetagenomeSeq: Sorting by sample type in plotMRheatmap
metagenomeseq plotmrheatmap written 22 months ago by Rachael • 0 • updated 22 months ago by Joseph Nathaniel Paulson • 270
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333
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MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 23 months ago by marypadilha • 0
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2
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413
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2
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metagenomeSeq: cumNormStat normalization default
microbiome metagenomeseq written 23 months ago by Brian Smith • 120
1
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3
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359
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3
answers
error using fitTimeSeries in metagenomeSeq
metagenomeseq fittimeseries written 2.1 years ago by wijera81 • 0 • updated 2.1 years ago by Joseph Nathaniel Paulson • 270
0
votes
1
answer
307
views
1
answer
Understand fold changes
metagenomeseq written 2.1 years ago by David • 860 • updated 2.1 years ago by Joseph Nathaniel Paulson • 270
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3
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713
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3
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paired analysis using metagenomeSeq
metagenomeseq logfc standard error paired samples written 2.2 years ago by manasishah86 • 30 • updated 2.1 years ago by mariamake0011 • 0
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2
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1.1k
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2
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DESeq2 16s microbiome size factors
rnaseq microbiome deseq2 metagenomeseq 16s written 2.2 years ago by jbatsx • 0 • updated 2.2 years ago by Joseph Nathaniel Paulson • 270
2
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1
answer
463
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1
answer
Metagenome seq errors using biom (1.3) file
metagenomeseq qiime biom written 2.3 years ago by dr.richrodrigues • 0 • updated 2.3 years ago by Joseph Nathaniel Paulson • 270
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1
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251
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1
answer
fitTimeSeries possible error
metagenomeseq fittimeseries written 2.3 years ago by giulia.masetti • 0 • updated 2.3 years ago by Joseph Nathaniel Paulson • 270
1
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2
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380
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2
answers
metagenomeSeq for continuous phenotype
limma metagenomeseq continuous written 2.3 years ago by pjgalli2 • 0
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1
answer
299
views
1
answer
fitZig coefficient for interaction terms?
metagenomeseq written 2.5 years ago by nhuda6 • 0 • updated 2.5 years ago by Joseph Nathaniel Paulson • 270
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votes
1
answer
301
views
1
answer
Aggregate By Taxonomy Error
metagenomeseq written 2.5 years ago by nhuda6 • 0 • updated 2.5 years ago by Joseph Nathaniel Paulson • 270
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3
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540
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3
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MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomics metagenomeseq anova written 2.5 years ago by David • 860
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