Showing: metagenomeseq • reset
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Phyloseq to metagenomeSeq
limma metagenomeseq written 5 months ago by nabiyogesh • 0
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metagenomeSeq error question: error on creation of newMRexperiment
microbiome metagenomeseq metagenomeseq error written 10 months ago by slizo001 • 0
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[metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormStatFast
metagenomeseq error cumnormstatfast features written 17 months ago by jol.espinoz • 20
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Paired Difference Analysis
metagenomeseq written 20 months ago by nhua • 0
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Filter low counts OTUs from a MRfull table to prepare a heatmap
metagenomeseq written 20 months ago by arguello.rguez • 0
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Including taxa names in heatmap in metagenomeseq
metagenomeseq heatmap gut microbiome written 21 months ago by arguello.rguez • 0 • updated 21 months ago by Joseph Nathaniel Paulson • 270
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metagenomeSeq pre-analysis Data Preporation for full genome sequencing
metagenomeseq full genome sequencing written 21 months ago by cmapoulton • 0 • updated 21 months ago by Hector Corrada Bravo • 60
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Should I normalize communities separately with metagenomeseq?
microbiome metagenomics metagenomeseq gut microbiome shotgun metagenomics written 23 months ago by lilianeconteville • 10 • updated 23 months ago by Joseph Nathaniel Paulson • 270
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How do you show/export color scale of a heatmap generated by plotMRheatmap of metagenomeSeq?
metagenomeseq color key plotmrheatmap written 2.3 years ago by chawonhe • 0
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Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq written 2.6 years ago by sasha • 0
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metagenomeSeq: role for fitLogNormal?
metagenomeseq written 2.6 years ago by handibles • 10 • updated 2.6 years ago by Joseph Nathaniel Paulson • 270
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metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
metagenomeseq written 2.6 years ago by handibles • 10 • updated 2.6 years ago by Joseph Nathaniel Paulson • 270
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Is it possible to create a Metagenomeseq heatmap with two coloured bars on the top?
metagenomeseq heatmap written 2.6 years ago by Key • 0 • updated 2.6 years ago by James W. MacDonald ♦ 51k
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metagenomeSeq log transformation
metagenomeseq logtransformation written 2.7 years ago by PJ • 0 • updated 2.7 years ago by Joseph Nathaniel Paulson • 270
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MetagenomeSeq: Sorting by sample type in plotMRheatmap
metagenomeseq plotmrheatmap written 2.8 years ago by Rachael • 0 • updated 2.8 years ago by Joseph Nathaniel Paulson • 270
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MetagenomeSeq: analysing paired samples
microbiome metagenomeseq paired samples written 2.9 years ago by marypadilha • 0
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metagenomeSeq: cumNormStat normalization default
microbiome metagenomeseq written 2.9 years ago by Brian Smith • 120
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error using fitTimeSeries in metagenomeSeq
metagenomeseq fittimeseries written 3.0 years ago by wijera81 • 0 • updated 3.0 years ago by Joseph Nathaniel Paulson • 270
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Understand fold changes
metagenomeseq written 3.0 years ago by David • 860 • updated 3.0 years ago by Joseph Nathaniel Paulson • 270
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paired analysis using metagenomeSeq
metagenomeseq logfc standard error paired samples written 3.1 years ago by manasishah86 • 30 • updated 3.1 years ago by mariamake0011 • 0
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DESeq2 16s microbiome size factors
rnaseq microbiome deseq2 metagenomeseq 16s written 3.1 years ago by jbatsx • 0 • updated 3.1 years ago by Joseph Nathaniel Paulson • 270
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Metagenome seq errors using biom (1.3) file
metagenomeseq qiime biom written 3.2 years ago by dr.richrodrigues • 0 • updated 3.2 years ago by Joseph Nathaniel Paulson • 270
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fitTimeSeries possible error
metagenomeseq fittimeseries written 3.2 years ago by giulia.masetti • 0 • updated 3.2 years ago by Joseph Nathaniel Paulson • 270
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metagenomeSeq for continuous phenotype
limma metagenomeseq continuous written 3.3 years ago by pjgalli2 • 0
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fitZig coefficient for interaction terms?
metagenomeseq written 3.4 years ago by nhuda6 • 0 • updated 3.4 years ago by Joseph Nathaniel Paulson • 270
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