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Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Hello, Thank you. I absolutely respect what you mention about p-values and logFC, I was just going to tackle that soon and thank you for po…

Comment: QSEA:Error in h(simpleError(msg, call)) by kf • 0

genome(qseaSet@regions)<-"BSgenome.Hsapiens.UCSC.hg38" solve the problem

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus by James W. MacDonald 67k

I don't know what you mean by 'a pairwise comparison', but the two analyses are equivalent, except in the second analysis you want to do `t…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

If you want to comment on an answer, please choose ADD COMMENT rather than ADD ANSWER, since you are not in fact adding an answer. ``` uni…

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

In fact, I used the BP ontology and I am using gene symbols rather than identifiers (IDs). Is there a way to verify how many genes from the…

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Answer: object 'hdac_targets' not found

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