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Comment: Diffbind: edgeR or DESeq2 ?
by
khanwaled68
• 0
DBA_SCORE_TMM_MINUS_EFFECTIVE: Purpose: This scoring method leverages the Trimmed Mean of M-values (TMM) normalization from the edgeR pack…
Comment: Diffbind: edgeR or DESeq2 ?
by
khanwaled68
• 0
If you are comparing expression data using DESeq2, you can integrate this approach by using the peak regions detected by MACS2 as input reg…
Comment: Diffbind: edgeR or DESeq2 ?
by
khanwaled68
• 0
Multiple Testing Correction: DESeq2 automatically corrects for multiple testing using the Benjamini-Hochberg method. Adjust the threshold (…
Answer: Unable to install/use limma
by
James W. MacDonald
66k
What happens if you do ``` library(limma) ```
Answer: 502 error biomaRt getLDS()
by
James W. MacDonald
66k
See here: https://support.bioconductor.org/p/9158791/
Votes
DESeq2 for ChIP-seq differential peaks
A: How to arrange multiple Gviz plots into a multipanelfigure?
Answer: How to add gene symbol in GeneRegionTrack in Gviz
Answer: How to add gene symbol in GeneRegionTrack in Gviz
A: Number of co-variables k in RUVSeq (RUVr)
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