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Comment: Error in retrieving clinical data
by
silickas
•
0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Comment: deseq2 lfc shrinkage with few DEGs
by
Robert
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0
I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
•
0
Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
by
aitor
•
0
Hi everyone.
I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…
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