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Comment: bioconductor.org not reachable from EU region
by
shepherl
2.6k
You have been previously able to install and access? To help debug may I ask the IP address of the machine you are using for access?
Comment: The correlation between normalized counts and TPM based on 2-factor analysis by
by
hequn
•
0
Thank you so much for you response.
TPM is calculated by the company, I do not know which software they used to generate them. I had used…
Comment: Sorting columns in pheatmap
by
Linda
•
0
Thank you Chris that is really helpful.
Now I have a situation whereby the columns are organised how I would like. However, it appears to…
Answer: The correlation between normalized counts and TPM based on 2-factor analysis by
by
Michael Love
32k
My first guess is that there is a bug in the merging code. I don't see anything in particular, but you've got a lot of code and whereas thi…
Comment: The correlation between normalized counts and TPM based on 2-factor analysis by
by
hequn
•
0
This is the code for figure 1
normalized_counts = as.data.frame(counts(dds, normalized = TRUE))
normalized_counts$ID = rownames(…
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