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Comment: Caching bam index files using BiocFileCache
by
Mike Smith
★
5.8k
This is great, thanks @lshep We've run into the `.bam` and `.bam.bai` issue before and only resolved it by copying files from the cache to …
Comment: Normalizing Cut&Tag peak data
by
ATpoint
★
1.6k
I would not make my life to difficult. Do that on the merged peaks, with one profile (line/smooth) per condition. You could do that based o…
Comment: Fold Change calculation when Batch Effect is present in RNA-seq data (DEseq2)
by
eve.olszanowski
•
0
It makes perfect sense. Thanks for the example, it was helpful.
But then my question is, how is the log2FC calculated? Because I thought it…
Comment: I can't upgrade to version 3.15 in R
by
Gordon Smyth
46k
1. Have you tried typing "y" instead of "yes"? The dialog is asking you to type one letter, not three.
2. What happened when you typed "yes…
Answer: I have problems installing DESeq2 using R4.1.2. It tells me that it is not avail
by
James W. MacDonald
61k
You did everything except the actual installation of R! The next step is
```
sudo apt install --no-install-recommends r-base
```
Which is…
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Gordon Smyth
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Lukas Weber
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EMBL Heidelberg / de.NBI, 2 minutes ago
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EMBL Heidelberg / de.NBI, 2 minutes ago
Singapore, 3 minutes ago
Sweden, 17 minutes ago
Wageningen University, Wageningen, the Netherlands, 42 minutes ago
United States, 45 minutes ago
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