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0
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47
views
0
answers
1
vote
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answers
90
views
0
answers
0
votes
1
answer
110
views
1
answer
2
votes
1
answer
75
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 6 weeks ago by sarahmacdonald860
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0
answers
109
views
0
answers
1
vote
1
answer
130
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 4 months ago by fabian.roger0810 • updated 4 months ago by Michael Love11k
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0
answers
215
views
0
answers
0
votes
1
answer
159
views
1
answer
0
votes
0
answers
193
views
0
answers
0
votes
2
answers
231
views
2
answers
0
votes
0
answers
130
views
0
answers
0
votes
0
answers
119
views
0
answers
0
votes
1
answer
237
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 10 months ago by amushegian0 • updated 10 months ago by Michael Love11k
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votes
1
answer
171
views
1
answer
Aditional undesired sample
phyloseq written 12 months ago by sanrrone0
3
votes
2
answers
528
views
2
answers
DESEQ2 (R) design/contrast formula questions
phyloseq deseq2 multiple factor design paired samples written 13 months ago by pete_bioinfo10 • updated 12 months ago by mcmurdie20
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votes
1
answer
484
views
1
answer
Interpretation of intercept-only model (~1) in DESeq2
phyloseq deseq2 written 13 months ago by piensaglobalmente0 • updated 13 months ago by Michael Love11k
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votes
3
answers
513
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3
answers
2
votes
1
answer
486
views
1
answer
Using DESeq2 after agglomerating OTUs
phyloseq deseq2 estimatesizefactors written 17 months ago by brandilyn.peters0 • updated 17 months ago by Michael Love11k
0
votes
1
answer
344
views
1
answer
phyloseq - plot_bar() error
phyloseq plot_bar() written 17 months ago by Brian Smith70 • updated 17 months ago by mcmurdie20
2
votes
2
answers
4.5k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 18 months ago by moanam0 • updated 18 months ago by mcmurdie20
1
vote
2
answers
748
views
2
answers
Multi-factor Comparison in DESeq 2 Issue
phyloseq deseq2 written 2.2 years ago by locon8330 • updated 2.2 years ago by Ryan C. Thompson5.6k
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0
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297
views
0
answers
0
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0
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461
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0
answers
0
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1
answer
311
views
1
answer
1
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1
answer
1.1k
views
1
answer
DESeqs two-factor two-level, interaction is interested
sequencing go phyloseq deseq2 written 2.8 years ago by Shucong Li60 • updated 2.8 years ago by Michael Love11k
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