0
votes
1
answer
81
views
1
answer
2
votes
1
answer
54
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 19 days ago by sarahmacdonald860
0
votes
0
answers
88
views
0
answers
1
vote
1
answer
118
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 3 months ago by fabian.roger0810 • updated 3 months ago by Michael Love11k
0
votes
0
answers
183
views
0
answers
0
votes
1
answer
138
views
1
answer
0
votes
0
answers
170
views
0
answers
0
votes
2
answers
211
views
2
answers
0
votes
0
answers
121
views
0
answers
0
votes
0
answers
112
views
0
answers
0
votes
1
answer
221
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 9 months ago by amushegian0 • updated 9 months ago by Michael Love11k
0
votes
1
answer
159
views
1
answer
Aditional undesired sample
phyloseq written 11 months ago by sanrrone0
3
votes
2
answers
478
views
2
answers
DESEQ2 (R) design/contrast formula questions
phyloseq deseq2 multiple factor design paired samples written 12 months ago by pete_bioinfo10 • updated 12 months ago by mcmurdie20
0
votes
1
answer
459
views
1
answer
Interpretation of intercept-only model (~1) in DESeq2
phyloseq deseq2 written 12 months ago by piensaglobalmente0 • updated 12 months ago by Michael Love11k
0
votes
3
answers
484
views
3
answers
2
votes
1
answer
436
views
1
answer
Using DESeq2 after agglomerating OTUs
phyloseq deseq2 estimatesizefactors written 16 months ago by brandilyn.peters0 • updated 16 months ago by Michael Love11k
0
votes
1
answer
322
views
1
answer
phyloseq - plot_bar() error
phyloseq plot_bar() written 16 months ago by Brian Smith70 • updated 16 months ago by mcmurdie20
2
votes
2
answers
4.3k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 17 months ago by moanam0 • updated 17 months ago by mcmurdie20
1
vote
2
answers
720
views
2
answers
Multi-factor Comparison in DESeq 2 Issue
phyloseq deseq2 written 2.1 years ago by locon8330 • updated 2.1 years ago by Ryan C. Thompson5.6k
0
votes
0
answers
281
views
0
answers
0
votes
0
answers
442
views
0
answers
0
votes
1
answer
301
views
1
answer
1
vote
1
answer
1.1k
views
1
answer
DESeqs two-factor two-level, interaction is interested
sequencing go phyloseq deseq2 written 2.8 years ago by Shucong Li60 • updated 2.8 years ago by Michael Love11k
0
votes
0
answers
240
views
0
answers
Phyloseq/DEseq transformed data
deseq phyloseq written 3.0 years ago by Susan Holmes120
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