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1
answer
89
views
1
answer
Install package phyloseq
phyloseq installation written 9 weeks ago by layeb0 • updated 9 weeks ago by Martin Morgan ♦♦ 21k
0
votes
1
answer
172
views
1
answer
tip_glom and annotations?
annotation phyloseq ggtree treeio tip_glom written 3 months ago by werdnus0 • updated 3 months ago by Guangchuang Yu970
1
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1
answer
166
views
1
answer
0
votes
1
answer
186
views
1
answer
Cannot read Biom file
phyloseq R biomformat written 6 months ago by channen12210 • updated 6 months ago by Axel Klenk830
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0
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118
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0
answers
2
votes
1
answer
328
views
1
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DESeq2 iterative size factor normalization did not converge
microbiome phyloseq deseq2 written 8 months ago by couchc0 • updated 8 months ago by Michael Love17k
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votes
1
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289
views
1
answer
phyloseq heatmap blank after multiple package updates
phyloseq heatmap written 8 months ago by newmanss0 • updated 8 months ago by Wolfgang Huber13k
1
vote
1
answer
312
views
1
answer
0
votes
1
answer
209
views
1
answer
Phyloseq to DESeq2 with multiple variables
phyloseq deseq2 multiple time points written 10 months ago by campbell870 • updated 10 months ago by Michael Love17k
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0
answers
245
views
0
answers
1
vote
0
answers
534
views
0
answers
0
votes
1
answer
435
views
1
answer
2
votes
1
answer
387
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 14 months ago by sarahmacdonald860
0
votes
0
answers
389
views
0
answers
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq ggplot2 color written 14 months ago by sarahmacdonald860 • updated 14 months ago by Michael Love17k
1
vote
1
answer
291
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 17 months ago by fabian.roger0810 • updated 17 months ago by Michael Love17k
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votes
0
answers
562
views
0
answers
0
votes
1
answer
511
views
1
answer
phyloseq biom json format conversion needed to hdf5 format for qiime
phyloseq hdf5 qiime biom json written 18 months ago by newmanss0 • updated 18 months ago by Bernd Fischer540
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0
answers
502
views
0
answers
0
votes
2
answers
488
views
2
answers
0
votes
0
answers
291
views
0
answers
0
votes
0
answers
232
views
0
answers
0
votes
1
answer
648
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 23 months ago by amushegian0 • updated 23 months ago by Michael Love17k
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votes
1
answer
284
views
1
answer
Aditional undesired sample
phyloseq written 2.1 years ago by sanrrone0
3
votes
2
answers
996
views
2
answers
DESEQ2 (R) design/contrast formula questions
phyloseq deseq2 multiple factor design paired samples written 2.1 years ago by pete_bioinfo10 • updated 2.1 years ago by mcmurdie20
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1
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1.1k
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1
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Interpretation of intercept-only model (~1) in DESeq2
phyloseq deseq2 written 2.2 years ago by piensaglobalmente10 • updated 2.2 years ago by Michael Love17k
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