0
votes
0
answers
17
views
0
answers
2
votes
1
answer
174
views
1
answer
DESeq2 iterative size factor normalization did not converge
microbiome phyloseq deseq2 written 5 weeks ago by couchc0 • updated 5 weeks ago by Michael Love14k
0
votes
1
answer
200
views
1
answer
phyloseq heatmap blank after multiple package updates
phyloseq heatmap written 6 weeks ago by newmanss0 • updated 5 weeks ago by Wolfgang Huber13k
1
vote
1
answer
192
views
1
answer
0
votes
1
answer
110
views
1
answer
Phyloseq to DESeq2 with multiple variables
phyloseq deseq2 multiple time points written 3 months ago by campbell870 • updated 3 months ago by Michael Love14k
0
votes
0
answers
151
views
0
answers
1
vote
0
answers
250
views
0
answers
0
votes
1
answer
271
views
1
answer
2
votes
1
answer
194
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 7 months ago by sarahmacdonald860
0
votes
0
answers
228
views
0
answers
1
vote
1
answer
207
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 10 months ago by fabian.roger0810 • updated 10 months ago by Michael Love14k
0
votes
0
answers
371
views
0
answers
0
votes
1
answer
343
views
1
answer
phyloseq biom json format conversion needed to hdf5 format for qiime
phyloseq hdf5 qiime biom json written 11 months ago by newmanss0 • updated 11 months ago by Bernd Fischer540
0
votes
0
answers
361
views
0
answers
0
votes
2
answers
350
views
2
answers
0
votes
0
answers
216
views
0
answers
0
votes
0
answers
196
views
0
answers
0
votes
1
answer
422
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 16 months ago by amushegian0 • updated 16 months ago by Michael Love14k
0
votes
1
answer
243
views
1
answer
Aditional undesired sample
phyloseq written 18 months ago by sanrrone0
3
votes
2
answers
732
views
2
answers
DESEQ2 (R) design/contrast formula questions
phyloseq deseq2 multiple factor design paired samples written 19 months ago by pete_bioinfo10 • updated 18 months ago by mcmurdie20
0
votes
1
answer
729
views
1
answer
Interpretation of intercept-only model (~1) in DESeq2
phyloseq deseq2 written 19 months ago by piensaglobalmente10 • updated 19 months ago by Michael Love14k
0
votes
3
answers
689
views
3
answers
2
votes
1
answer
605
views
1
answer
Using DESeq2 after agglomerating OTUs
phyloseq deseq2 estimatesizefactors written 22 months ago by brandilyn.peters0 • updated 22 months ago by Michael Love14k
0
votes
1
answer
453
views
1
answer
phyloseq - plot_bar() error
phyloseq plot_bar() written 23 months ago by Brian Smith90 • updated 23 months ago by mcmurdie20
2
votes
2
answers
6.0k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 2.0 years ago by moanam0 • updated 2.0 years ago by mcmurdie20
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