0
votes
1
answer
92
views
1
answer
0
votes
1
answer
43
views
1
answer
Invalid class DESeqDataSet object with Phyloseq
phyloseq deseq2 written 7 weeks ago by amgodogma0 • updated 7 weeks ago by Michael Love19k
0
votes
1
answer
184
views
1
answer
Install package phyloseq
phyloseq installation written 6 months ago by layeb0 • updated 6 months ago by Martin Morgan ♦♦ 22k
0
votes
1
answer
239
views
1
answer
tip_glom and annotations?
annotation phyloseq ggtree treeio tip_glom written 7 months ago by werdnus0 • updated 7 months ago by Guangchuang Yu1.0k
1
vote
1
answer
218
views
1
answer
1
vote
1
answer
383
views
1
answer
Cannot read Biom file
phyloseq R biomformat written 10 months ago by channen12210 • updated 10 months ago by Axel Klenk920
0
votes
0
answers
179
views
0
answers
2
votes
1
answer
444
views
1
answer
DESeq2 iterative size factor normalization did not converge
microbiome phyloseq deseq2 written 12 months ago by couchc0 • updated 12 months ago by Michael Love19k
0
votes
1
answer
345
views
1
answer
phyloseq heatmap blank after multiple package updates
phyloseq heatmap written 12 months ago by newmanss0 • updated 12 months ago by Wolfgang Huber13k
1
vote
1
answer
375
views
1
answer
0
votes
1
answer
270
views
1
answer
Phyloseq to DESeq2 with multiple variables
phyloseq deseq2 multiple time points written 14 months ago by campbell870 • updated 14 months ago by Michael Love19k
0
votes
0
answers
282
views
0
answers
1
vote
0
answers
699
views
0
answers
0
votes
1
answer
523
views
1
answer
2
votes
1
answer
460
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 18 months ago by sarahmacdonald860
0
votes
0
answers
533
views
0
answers
Controlling colours assigned to order in DeSeq2 plot in phyloseq
phyloseq ggplot2 color written 19 months ago by sarahmacdonald860 • updated 19 months ago by Michael Love19k
1
vote
1
answer
353
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 22 months ago by fabian.roger0810 • updated 22 months ago by Michael Love19k
0
votes
0
answers
647
views
0
answers
0
votes
1
answer
608
views
1
answer
phyloseq biom json format conversion needed to hdf5 format for qiime
phyloseq hdf5 qiime biom json written 23 months ago by newmanss0 • updated 23 months ago by Bernd Fischer540
0
votes
0
answers
622
views
0
answers
0
votes
2
answers
552
views
2
answers
0
votes
0
answers
350
views
0
answers
0
votes
0
answers
256
views
0
answers
0
votes
1
answer
774
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 2.3 years ago by amushegian0 • updated 2.3 years ago by Michael Love19k
0
votes
1
answer
317
views
1
answer
Aditional undesired sample
phyloseq written 2.5 years ago by sanrrone0
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