1
vote
1
answer
84
views
1
answer
0
votes
1
answer
68
views
1
answer
Phyloseq to DESeq2 with multiple variables
phyloseq deseq2 multiple time points written 5 weeks ago by campbell870 • updated 5 weeks ago by Michael Love13k
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votes
0
answers
121
views
0
answers
1
vote
0
answers
190
views
0
answers
0
votes
1
answer
217
views
1
answer
2
votes
1
answer
159
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 5 months ago by sarahmacdonald860
0
votes
0
answers
194
views
0
answers
1
vote
1
answer
186
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 8 months ago by fabian.roger0810 • updated 8 months ago by Michael Love13k
0
votes
0
answers
314
views
0
answers
0
votes
1
answer
283
views
1
answer
0
votes
0
answers
281
views
0
answers
0
votes
2
answers
318
views
2
answers
0
votes
0
answers
190
views
0
answers
0
votes
0
answers
174
views
0
answers
0
votes
1
answer
363
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 14 months ago by amushegian0 • updated 14 months ago by Michael Love13k
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votes
1
answer
221
views
1
answer
Aditional undesired sample
phyloseq written 16 months ago by sanrrone0
3
votes
2
answers
674
views
2
answers
DESEQ2 (R) design/contrast formula questions
phyloseq deseq2 multiple factor design paired samples written 17 months ago by pete_bioinfo10 • updated 16 months ago by mcmurdie20
0
votes
1
answer
634
views
1
answer
Interpretation of intercept-only model (~1) in DESeq2
phyloseq deseq2 written 17 months ago by piensaglobalmente0 • updated 17 months ago by Michael Love13k
0
votes
3
answers
639
views
3
answers
2
votes
1
answer
574
views
1
answer
Using DESeq2 after agglomerating OTUs
phyloseq deseq2 estimatesizefactors written 21 months ago by brandilyn.peters0 • updated 21 months ago by Michael Love13k
0
votes
1
answer
418
views
1
answer
phyloseq - plot_bar() error
phyloseq plot_bar() written 21 months ago by Brian Smith70 • updated 21 months ago by mcmurdie20
2
votes
2
answers
5.6k
views
2
answers
Error in file(con, “r”) : cannot open the connection
phyloseq R import_biom otu qiime written 22 months ago by moanam0 • updated 22 months ago by mcmurdie20
1
vote
2
answers
911
views
2
answers
Multi-factor Comparison in DESeq 2 Issue
phyloseq deseq2 written 2.5 years ago by locon8330 • updated 2.5 years ago by Ryan C. Thompson5.9k
0
votes
0
answers
382
views
0
answers
0
votes
0
answers
551
views
0
answers
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