1
vote
1
answer
97
views
1
answer
0
votes
1
answer
95
views
1
answer
Cannot read Biom file
phyloseq R biomformat written 6 weeks ago by channen12210 • updated 6 weeks ago by Axel Klenk820
0
votes
0
answers
52
views
0
answers
2
votes
1
answer
210
views
1
answer
DESeq2 iterative size factor normalization did not converge
microbiome phyloseq deseq2 written 3 months ago by couchc0 • updated 3 months ago by Michael Love15k
0
votes
1
answer
239
views
1
answer
phyloseq heatmap blank after multiple package updates
phyloseq heatmap written 3 months ago by newmanss0 • updated 3 months ago by Wolfgang Huber13k
1
vote
1
answer
233
views
1
answer
0
votes
1
answer
143
views
1
answer
Phyloseq to DESeq2 with multiple variables
phyloseq deseq2 multiple time points written 5 months ago by campbell870 • updated 5 months ago by Michael Love15k
0
votes
0
answers
174
views
0
answers
1
vote
0
answers
330
views
0
answers
0
votes
1
answer
317
views
1
answer
2
votes
1
answer
232
views
1
answer
DESeq2 in phyloseq
phyloseq deseq2 written 9 months ago by sarahmacdonald860
0
votes
0
answers
268
views
0
answers
1
vote
1
answer
225
views
1
answer
rlogTransformation vs getVarianceStabilizedData
phyloseq deseq2 R written 12 months ago by fabian.roger0810 • updated 12 months ago by Michael Love15k
0
votes
0
answers
409
views
0
answers
0
votes
1
answer
399
views
1
answer
phyloseq biom json format conversion needed to hdf5 format for qiime
phyloseq hdf5 qiime biom json written 13 months ago by newmanss0 • updated 13 months ago by Bernd Fischer540
0
votes
0
answers
401
views
0
answers
0
votes
2
answers
386
views
2
answers
0
votes
0
answers
233
views
0
answers
0
votes
0
answers
207
views
0
answers
0
votes
1
answer
479
views
1
answer
Newer version of DESeq2 gives different results
phyloseq deseq2 written 18 months ago by amushegian0 • updated 18 months ago by Michael Love15k
0
votes
1
answer
256
views
1
answer
Aditional undesired sample
phyloseq written 20 months ago by sanrrone0
3
votes
2
answers
803
views
2
answers
DESEQ2 (R) design/contrast formula questions
phyloseq deseq2 multiple factor design paired samples written 20 months ago by pete_bioinfo10 • updated 20 months ago by mcmurdie20
0
votes
1
answer
805
views
1
answer
Interpretation of intercept-only model (~1) in DESeq2
phyloseq deseq2 written 21 months ago by piensaglobalmente10 • updated 21 months ago by Michael Love15k
0
votes
3
answers
741
views
3
answers
2
votes
1
answer
652
views
1
answer
Using DESeq2 after agglomerating OTUs
phyloseq deseq2 estimatesizefactors written 2.0 years ago by brandilyn.peters0 • updated 2.0 years ago by Michael Love15k
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